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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATACTGTATCAGACGCATCCGTTTGTCTTCAGAACAACAACATTCCTTTCAACATTCTCATCTCTGACTCTGGCAAACGAATCTTCCTTCTCCCTCAGgttaaatctcacaacattataaacgaaacttgatattgactgtcaaaagaagagctttctaattaaccattgtttgatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G55120.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G55120.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA14G02500.1 (Glycine max), 5'ss of exon 6
AGATACTGTATCAGACGCATCCGTTTGTCTTCAGAACAACAACATTCCTTTCAACATTCTCATCTCTGACTCTGGCAAACGAATCTTCCTTCTCCCTCAGgttaaatctcacaacattataaacgaaacttgata-ttgactgtcaaaagaagagctttctaattaaccat-tgtttgatttgcag
| ||  ||| ||||| || |   | |||||||||||||||||||| ||||||||  |||| |||||||||| ||| || | | |||  ||  | || ||||| || |    |   |    ||  |||  |   || |  | | |||  ||  | |       ||| ||||  | | |||   |   
AAATGTTGTTTCAGATGCCTGTATATGTCTTCAGAACAACAACATACCTTTCAATGTTCTTATCTCTGACTGTGGAAAGCAAGTCTATCTGTTACCACAGgtaaactaattcttgaa-gcaagtgaatttgcctaatctattttcattagttgtgtgggggtatttaccaaatatctgaacag---

upper sequence: AT5G55120.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G46230.1 (Glycine max), 5'ss of exon 6
AGATACTGTATCAGACGCATCCGTTTGTCTTCAGAACAACAACATTCCTTTCAACATTCTCATCTCTGACTCTGGCAAACGAATCTTCCTTCTCCCTCAGgt----taaatctcacaacat---tataaacgaaacttgata-ttgactgtcaaaagaagagctttctaattaaccattgtttgatttgcag
| |   ||| ||||| ||||   | |||||||||||||||||||| ||||||||  |||| |||||||||| ||| || | | | |  ||  | || |||||    |||||   |   | |     |||| |||  |  ||| |  | | |||  ||  | |     || ||| | |    | |||   |||
AAACGTTGTTTCAGATGCATGTATATGTCTTCAGAACAACAACATACCTTTCAATGTTCTTATCTCTGACTGTGGAAAGCAAGTGTATCTGTTACCACAGgtaaattaaattctaattcttggaagtaaatgaatttgcataatccattttcattagttgtgtggggtatttaccaa--aatagatgaacag