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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGATGTCTTATTGATTTGCTCAAATGCAATGCAATACAATTCCTCAGACACTGTCTACTATAAACAGgtaaatcatgtttttatattctcaccaattttctttctttgctaattagggtttacttttctgtctgccggtattttaaactccttttttttcctattag

Basic information

species Arabidopsis thaliana
transcript AT5G55040.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G55040.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G05000.1 (Glycine max), 5'ss of exon 7
AGCGATGTCTTATTGATTTGCTCAAATGCAATGCAATACAATTCCTCAGACACTGTCTACTATAAACAGgtaaatcatgtttttatattctcaccaattttctttctttgctaattagggtt-------tacttttctgtctgccggtattttaaactccttttttttcctattag
|  |||||||| || ||||||||||||||||||||||||||| |  |||| ||| | ||| | |||||||||    |   ||  ||  |  |     ||  ||| |  | | ||  |  ||        || || | |   ||    || | |     || | | |||   |    
ATTGATGTCTTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCAGAGACTATATACCACAAACAGgta---taaagttcaatgcttccctgtgttcccttcccctcccaacaaatgtgacatcaataattgttttattgtgcttactgtgtgacccctatatttgtcacag-

upper sequence: AT5G55040.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G43050.1 (Glycine max), 5'ss of exon 6
AGCGATGTCTTATTGATTTGCTCAAATGCAATGCAATACAATTCCTCAGACACTGTCTACTATAAACAGgtaaatcatgtttttatattctcaccaattttctttctttgctaattagggt--------ttacttttctgtctgccggtattttaaactccttttttttcctattag
|  |||||||| || ||||||||||||||||||||||||||| |  |||| ||| | ||| | |||||||||    |    |  ||  |  |    |||  |||||  | | ||| |  ||        | | | || |   ||    || | |     || | | |||   |    
ACTGATGTCTTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCAGAGACTATATACCACAAACAGgta---taaagctcaatgcttccctgcattccctttccctcccaataaatgtgacatcaataattgtttttattgtgcttactgtgtgacccctatatttgtcacag-