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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGGCGGCTATGGTTATGCAGCTCAACCACCAACTCAAGACCCTAATGCGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGgtaactcaataacactaataaacaagaataatattttaagatatgcatcatgtgaatatgttcttacctttcttgtttttgcaattgcag

Basic information

species Arabidopsis thaliana
transcript AT5G54900.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124791729|gb|EH881408.1|EH881408
EST:     CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAG                         TGAAACATCAACATC
genomic: CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGgtaactcaat ... gcaattgcagTGAAACATCAACATC
EST: gi|116479564|gb|EG522156.1|EG522156
EST:     CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAG                         TGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
genomic: CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGgtaactcaat ... gcaattgcagTGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
EST: gi|125067286|gb|EL133846.1|EL133846
EST:     CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAG                         TGAAACATCAACATCAGCTATTTCTACCAA
genomic: CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGgtaactcaat ... gcaattgcagTGAAACATCAACATCAGCTATTTCTACCAA
EST: gi|86083467|gb|DR379226.1|DR379226
EST:     CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAG                         TGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
genomic: CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGgtaactcaat ... gcaattgcagTGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
EST: gi|116479553|gb|EG522145.1|EG522145
EST:     CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAG                         TGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
genomic: CGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGgtaactcaat ... gcaattgcagTGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
EST: gi|164192384|gb|ES024428.1|ES024428
EST:     AGCAACGTCAG                         TGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG
genomic: AGCAACGTCAGgtaactcaat ... gcaattgcagTGAAACATCAACATCAGCTATTTCTACCAATGTCTTGGAACAAAAGATGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGGGCGGCTATGGTTATGCAGCTCAACCACCAACTCAAGACCCTAATGCGTACTATGGTGGTTACACTGGCTATGGCAACTATCAGCAGCAACGTCAGgtaactcaataacactaataaacaagaataatattttaagatatgcatcatgtgaatatgttcttacctttcttgtttttgcaattgcag

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