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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCTATACTATTGAGGCTATGATGGGAGATCGGAAGGCTTTGCAGGCTGGTACTAGCCACAATTTAGGCCAGAACTTTTCTCGTGCCTTTGGAACTCAGgtacagaactattattgtctcacaagtatgtcatgcttatcgagacttgaatttgtttggagtttagttctctcatttttttagtgacgatagtattggtgcctactggttcatttagtcacatcttcgttttgcaacttcatcatgaaagaatgttaaatgacgtaatgatgatgccag

Basic information

species Arabidopsis thaliana
transcript AT5G52520.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52520.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os07g07060.1 (Oryza sativa), 5'ss of exon 4
AACCTATACTATTGAGGCTATGATGGGAGATCGGAAGGCTTTGCAGGCTGGTACTAGCCACAATTTAGGCCAGAACTTTTCTCGTGCCTTTGGAACTCAGgt-acag---aactattattgtctcacaagtatgtcatgcttatcgagacttgaatttgtttggagtttagttctctcatttttttagtgacgatagtattggtgcctactggttcatttagtcacatcttcgttttgcaacttcatcatgaaagaatgttaaatgacgtaatgatgatgccag
 ||||| ||||| || ||||||||||| ||  |||||||||| |||||||| || ||||||||  | || |||||||| || |||||||||||||| ||||| || |        ||| | |||  || || | |  |   | | | |   || |    |||   ||    || |   |||  | |      | |  |||                                                                                    
GACCTACACTATAGAAGCTATGATGGGTGACAGGAAGGCTTTACAGGCTGGAACCAGCCACAACCTTGGACAGAACTTCTCCCGTGCCTTTGGAACACAGgttactgtttggtgtttactatctt-catgt-tcttgtttgttttgtgtactggaaccattttatgtaccatttttggattcctatgtcatagttgctataa----------------------------------------------------------------------------------

upper sequence: AT5G52520.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv16s0050g00960.t01 (Vitis vinifera), 5'ss of exon 6
AACCTATACTATTGAGGCTATGATGGGAGATCGGAAGGCTTTGCAGGCTGGTACTAGCCACAATTTAGGCCAGAACTTTTCTCGTGCCTTTGGAACTCAGgtacagaactattattgtctcacaagtatgtcatgcttatcgagacttgaatttgtttggagtttagttctctcatttttttagtgacgatagtattggtgcctactggttcatttagtcacatcttcgttttgcaacttcatcatgaaagaatgttaaatgacgtaatgatgatgccag
 |||||||| ||||||||||||||||| |||||||||||| | |||||||| || ||||||||  | || ||||| ||||||||||| |||||||| ||||| |    |  ||    || |     | | | ||  | ||           ||| | ||   || ||| |||  |  |    | |||  ||| | ||  | ||||                                                                           
GACCTATACAATTGAGGCTATGATGGGTGATCGGAAGGCTCTACAGGCTGGAACCAGCCACAACCTTGGACAGAATTTTTCTCGTGCTTTTGGAACACAGgttcttgtcatttgacttcac-ttgttttctaatattcattctaggccatgttt-tctgatattcagtgctc--agctgcgaactgagtatattgtt--tacctag--------------------------------------------------------------------------

upper sequence: AT5G52520.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ28103 (Selaginella moellendorffii), 5'ss of exon 6
AACCTATACTATTGAGGCTATGATGGGAGATCGGAAGGCTTTGCAGGCTGGTACTAGCCACAATTTAGGCCAGAACTTTTCTCGTGCCTTTGGAACTCAGgtacagaactattattgtctcacaagtatgtcatgcttatcgagacttgaatttgtttggagtttagttctctcatttttttagtgacgatagtattggtgcctactggttcatttagtcacatcttcgttttgcaacttcatcatgaaagaatgttaaatgacgtaatgatgatgccag
 || ||||||||||| || |||||||||||||| | ||| ||||| ||||||||||| |||||  | ||||| || ||| |||| || ||||  |||||||||    || | |  |||  |  | || | || ||  | |   |  || |    |   |                                                                                                                         
TACGTATACTATTGAAGCCATGATGGGAGATCGAAGGGCGTTGCAAGCTGGTACTAGTCACAACCTTGGCCAAAATTTTGCTCGAGCTTTTGAGACTCAGgtatcacacaaattgtgtacc-tatgtgtttc-tgtctctgatgttttcatcccggcag-------------------------------------------------------------------------------------------------------------------------

upper sequence: AT5G52520.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ07778 (Selaginella moellendorffii), 5'ss of exon 6
AACCTATACTATTGAGGCTATGATGGGAGATCGGAAGGCTTTGCAGGCTGGTACTAGCCACAATTTAGGCCAGAACTTTTCTCGTGCCTTTGGAACTCAGgtacagaactattattgtctcacaagtatgtcatgcttatcgagacttgaatttgtttggagtttagttctctcatttttttagtgacgatagtattggtgcctactggttcatttagtcacatcttcgttttgcaacttcatcatgaaagaatgttaaatgacgtaatgatgatgccag
 || ||||||||||| || |||||||||||||| | ||| ||||| |||||||| || |||||  | ||||| || ||| | || || ||||  |||||||||    || |  ||||| | ||   |||||     |    ||   ||  ||       |                                                                                                                        
TACGTATACTATTGAAGCCATGATGGGAGATCGAAGGGCGTTGCAAGCTGGTACAAGTCACAACCTTGGCCAAAATTTTGCCCGAGCTTTTGAGACTCAGgtatcacacaa--attgtgt-acctatatgtttctgtctctgatgttttcatcctggcag------------------------------------------------------------------------------------------------------------------------