1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAAAGATACCTGCTAAACTTGGATATGGAGAACAAGGCTCTCCACCTACTATCCCCGgtataaatacgcttcatcaataagcttttaaaatgtgtattcatgtttgtgaaaaaaatacgggatttcgacattataactaaaaacaaccttgcaaacttcag
species | Arabidopsis thaliana |
transcript | AT5G48580.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTGCTAAACTTGGATATGGGAGAACAAGGCTCTCCACCTACTATCCCCG GTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAATGAAAAACEST: gi|86081492|gb|DR377249.1|DR377249
genomic: CCTGCTAAACTTGGATATGG-AGAACAAGGCTCTCCACCTACTATCCCCGgtataaatac ... caaacttcagGTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAATGAAAAAC
EST: ACCTGCTAAACTTGGATATGGAGAACAAGGCTCTCCACCTACTATCCCCG GTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAATGAAAAACEST: gi|164065299|gb|ES155659.1|ES155659
genomic: ACCTGCTAAACTTGGATATGGAGAACAAGGCTCTCCACCTACTATCCCCGgtataaatac ... caaacttcagGTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAATGAAAAAC
EST: CCTGCTAAACTTGGATATGGAGAACAAAGGCTCTCCACCTACTATCCCAG GTGGTGCAACACTGATCTTTGACACAGAEST: gi|164037748|gb|ES148763.1|ES148763
genomic: CCTGCTAAACTTGGATATGGAGAACAA-GGCTCTCCACCTACTATCCCCGgtataaatac ... caaacttcagGTGGTGCAACACTGATCTTTGACACAGA
EST: ACCTGCTAAACTTGGATATGGAGAACAAGGCTCTCCACCTACTATCCCCG GTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAAEST: gi|125216421|gb|EL230504.1|EL230504
genomic: ACCTGCTAAACTTGGATATGGAGAACAAGGCTCTCCACCTACTATCCCCGgtataaatac ... caaacttcagGTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAA
EST: ACCTGCTAAACTTGGATATGGAGAACAAGACTCTCCACCTACTATCCCCG GTGGTGCAACACTGATEST: gi|86084981|gb|DR380740.1|DR380740
genomic: ACCTGCTAAACTTGGATATGGAGAACAAGGCTCTCCACCTACTATCCCCGgtataaatac ... caaacttcagGTGGTGCAACACTGAT
EST: ACCTGCTAAACTTGGATATGGAGAACAAGGCTCTCCACCTACTATCCCCG GTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAATGAAAAACEST: gi|124910499|gb|EH984579.1|EH984579
genomic: ACCTGCTAAACTTGGATATGGAGAACAAGGCTCTCCACCTACTATCCCCGgtataaatac ... caaacttcagGTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAATGAAAAAC
EST: ACCTGCTAAACTTGGATATGGAGAACAAGGCTCTCCACCTACTATCCCCG GTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAATGAAAAA
genomic: ACCTGCTAAACTTGGATATGGAGAACAAGGCTCTCCACCTACTATCCCCGgtataaatac ... caaacttcagGTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAATGAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAAAGATACCTGCTAAACTTGGATATGGAGAACAAGGCTCTCCACCTACTATCCCCGgtataaatacgcttcatcaataagcttttaaaatgtgtattcatgtttgtgaaaaaaatacgggatttcgacattataactaaaaacaaccttgcaaacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA