1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCAGAATGTAATGCAAGGGAAAGATGAAGGCGCAGATAATCTTAGCAAAGAAGACGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAATGGAAGGgtaagtatgatcaagtgacacattgttttgttaaaagagaagactttttcagtaggctctgaaccaaagatatgtcttcttttcttacttggcctacttgatgcgatctcag
species | Arabidopsis thaliana |
transcript | AT5G48470.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AATCCGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAAAGGAAGG GGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAEST: gi|86082449|gb|DR378208.1|DR378208
genomic: AAGACGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAATGGAAGGgtaagtatga ... gcgatctcagGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTA
EST: AATCCGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAAAGGAAGG GGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAEST: gi|86078170|gb|DR373927.1|DR373927
genomic: AAGACGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAATGGAAGGgtaagtatga ... gcgatctcagGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTA
EST: AATCCGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAAAGGAAGG GGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTA
genomic: AAGACGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAATGGAAGGgtaagtatga ... gcgatctcagGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGAATGTAATGCAAGGGAAAGATGAAGGCGCAGATAATCTTAGCAAAGAAGACGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAATGGAAGGgtaagtatgatcaagtgacacattgttttgttaaaagagaagactttttcagtaggctctgaaccaaagatatgtcttcttttcttacttggcctacttgatgcgatctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG