1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATCAGAAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAGgtaaaaatctgtcttgcaatcaatcttcttgctaagtaatgtcaaccttttgatgatggtggtcttctttgatgattgtttgcctag
species | Arabidopsis thaliana |
transcript | AT5G48300.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAG ACTGCTACGGAAAAGAGEST: gi|86075039|gb|DR370796.1|DR370796
genomic: AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAGgtaaaaatct ... gtttgcctagACTGCTACGGAAAAGAG
EST: AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGACTATTACGAG ACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGTEST: gi|125297474|gb|EL311559.1|EL311559
genomic: AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAGgtaaaaatct ... gtttgcctagACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGT
EST: AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAG ACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGEST: gi|86084119|gb|DR379878.1|DR379878
genomic: AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAGgtaaaaatct ... gtttgcctagACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTG
EST: AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGACTATTACGAG ACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGT
genomic: AAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAGgtaaaaatct ... gtttgcctagACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTCCTGCATATCAGAAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGAGgtaaaaatctgtcttgcaatcaatcttcttgctaagtaatgtcaaccttttgatgatggtggtcttctttgatgattgtttgcctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT