1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CACAACTATATATTTGTCCTTGTTATATGGTTTATATGTACCTGACTGGGAGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataatggtttcttccttctacaacaacttagttacatattctgtcgcggtcataatatcgaaactgtttag
species | Arabidopsis thaliana |
transcript | AT5G47900.5 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG AATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATEST: gi|116435431|gb|EG478023.1|EG478023
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... aactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
EST: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG AATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATEST: gi|116435429|gb|EG478021.1|EG478021
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... aactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
EST: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG AATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATEST: gi|116435426|gb|EG478018.1|EG478018
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... aactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
EST: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG AATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATEST: gi|116435479|gb|EG478071.1|EG478071
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... aactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
EST: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG AATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATEST: gi|116435436|gb|EG478028.1|EG478028
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... aactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
EST: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTG AATCTGAAGGTGAAATGTGGGGTACGAGGTCGCACTGGACCAGGCTGTAAT
genomic: AGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataat ... aactgtttagAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAACTATATATTTGTCCTTGTTATATGGTTTATATGTACCTGACTGGGAGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGgttagataatggtttcttccttctacaacaacttagttacatattctgtcgcggtcataatatcgaaactgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG