1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGAGTTGCAAACAGCTTGTGGCCAGATGATAGATTTGATCACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAATgtgagtcaactgtgggcattgtctaaattttagatacggtttcttctgatggttgattagatgaaaggcagtattctgacctgatgcaatggttttcaacttgcag
species | Arabidopsis thaliana |
transcript | AT5G47770.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAAT CCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCEST: gi|124765426|gb|EH855556.1|EH855556
genomic: CCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAATgtgagtcaac ... caacttgcagCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTC
EST: AAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAAT CCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCEST: gi|124767568|gb|EH857698.1|EH857698
genomic: AAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAATgtgagtcaac ... caacttgcagCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCC
EST: CCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAAT CCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCEST: gi|125168167|gb|EL192997.1|EL192997
genomic: CCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAATgtgagtcaac ... caacttgcagCCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCC
EST: TCACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAAAT CCACCGTCGTATTGTCCAGTACAAAACGGCTTEST: gi|124909961|gb|EH984041.1|EH984041
genomic: TCACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAA-Tgtgagtcaac ... caacttgcagCCACCGTCGTATTGTCCAGTACAAAACGGCTT
EST: ATCACCACCTTTGAAGGAGAAAAGGATT-GGCCAAGTACTCATTGTCAAT CCACCGTCGTATTGEST: gi|125004068|gb|EL076337.1|EL076337
genomic: ATCACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAATgtgagtcaac ... caacttgcagCCACCGTCGTATTG
EST: CACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTAAGTCAAT CCACCGTCGTATTGTCCAGTACAA
genomic: CACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATT--GTCAATgtgagtcaac ... caacttgcagCCACCGTCGTATTGTCCAGTACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAGTTGCAAACAGCTTGTGGCCAGATGATAGATTTGATCACCACCTTTGAAGGAGAAAAGGATTTGGCCAAGTACTCATTGTCAATgtgagtcaactgtgggcattgtctaaattttagatacggtttcttctgatggttgattagatgaaaggcagtattctgacctgatgcaatggttttcaacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA