Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGCAGCTATTTCAAGTTCTGATCTTTTTGGCCACGGACCAGATGATTCCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGgtaaagttctgaagtagaatcaaattcttcagcttttcttaactctgcttataaggtttttttatttgactttgtttattattgggcacag

Basic information

species Arabidopsis thaliana
transcript AT5G46750.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124729737|gb|EH821139.1|EH821139
EST:     CCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAG                         GCGCAGCAAGATATGTCATC
genomic: CCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGgtaaagttct ... ttgggcacagGCGCAGCAAGATATGTCATC
EST: gi|86076412|gb|DR372169.1|DR372169
EST:     CCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAG                         GCGCAGCAAGATATGTCATCTATTGCTAACTTAGCTGAAGAAACAAAGAAT
genomic: CCAACATCGATATCACTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGgtaaagttct ... ttgggcacagGCGCAGCAAGATATGTCATCTATTGCTAACTTAGCTGAGGAAACAAAGAAT
EST: gi|164237390|gb|EL985678.1|EL985678
EST:     AGCGATCTCATCAACCGAATTTCTTTCCAG                         GCGCAGCAAGATATGTCATCTATTGCTAACTTAGCTGAGGAA-CAAAGA
genomic: AGCGATCTCATCAACCGAATTTCTTTCCAGgtaaagttct ... ttgggcacagGCGCAGCAAGATATGTCATCTATTGCTAACTTAGCTGAGGAAACAAAGA
EST: gi|124939638|gb|EL016163.1|EL016163
EST:     CTGCAAGCGATCTCATCAACCGAATTTCTTTCCAG                         GCGCAGCAAGATATGTCATCTATTGCTAAACTTAGCTGAGGAAACAAAGAA
genomic: CTGCAAGCGATCTCATCAACCGAATTTCTTTCCAGgtaaagttct ... ttgggcacagGCGCAGCAAGATATGTCATCTATTGCTAA-CTTAGCTGAGGAAACAAAGAA