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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTCTAAAGgtaaataattgccttttatgaagttttttgaagttgtctttcttgttgatttgctgtgtatgactggttttgcattttatggaaacggttag

Basic information

species Arabidopsis thaliana
transcript AT5G46630.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G46630.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os02g46510.1 (Oryza sativa), 5'ss of exon 6
GTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTCTAAAGgtaaataattgccttttatgaagttttttgaagttgtctt-tcttgttgatttgctgtgtatgactg-gttttgcattt--tatggaaacggttag--------
|| ||  |||| ||||| ||||||||||| ||||| ||||| ||||||||||  | || |  |  |||||  ||| ||| | |  |||  | || ||| | | ||   | |  ||  |  |    |||  | ||||||  |            
GTTTTCTTGGACATTGTTGAAAGTGTAAATCTTCTTATGTCTTCTAAAGgtatttcatggattactatgat-tttattgtactgctctgatgtttttgttgtccttaatgttgctttgactgatgtttaatgtggaaattgccttctctgcag

upper sequence: AT5G46630.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G16630.3 (Glycine max), 5'ss of exon 6
GTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTCTAAAGgtaaataattgccttttatgaagttttttgaagttgtctttcttgttgatttgctgtgta-tgactggttttgcattttatggaaacggttag
|| || ||||||||||||||||||||||| ||||| ||||| |||||||||      | |  ||      | |||| |  |  |   | | |  | | ||  | |  |  | ||| ||||   | ||||             
GTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTTATGTCTTCTAAAGgtgggctgtggatttc-----atttttctccatattaatatttgctaggttgcccgcatgctaactagtttgtgaatttag------------

upper sequence: AT5G46630.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G23670.2 (Glycine max), 5'ss of exon 6
GTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTCTAAAGgtaaataattgccttttatgaagttttttgaagttgtctttcttgttgatttgctgtgtatgactggttttgcattttatggaaacggttag
|| || ||||||||||||||||||||||| ||||| ||||| || ||||||      | |  ||||||     |   |   | | | |     ||||  |  |||    | |||||||| | | ||||             
GTCTTCCTGGATATTGTGGAAAGTGTAAATCTTCTAATGTCTTCAAAAGgtgggctgtggg-ttttatttttctccatattgatatttgctaggttgcctgcctgc---taactggtttgggaatttag------------

upper sequence: AT5G46630.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv02s0012g00910.t01 (Vitis vinifera), 5'ss of exon 6
GTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTCTAAAGgtaaataattgccttttatgaagttttttgaagttgtctttcttgttgatttgctgtgtatgactggttttgcattttatggaaacggttag
|||||||||||||||||||||||||| || ||||| ||||| || |||||| |||   ||   ||    |  |||| || | |   | ||  ||||   || ||  |||  | | | |    ||| ||             
GTGTTTCTGGATATTGTGGAAAGTGTTAATCTTCTAATGTCTTCCAAAGgtgaatg-ctgttcttggaaatattttgtgcaatg--catttctgtttgcttacttagtaaaatttggtg---attgtag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085683|gb|DR381442.1|DR381442
EST:     GTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTCTAAAG                         GCAACGTTCTTCGGTGTGATGTGACCGGGAAAGTTTTAATGAAATGTTTCC
genomic: GTGTTTCTGGATATTGTGGAAAGTGTAAACCTTCTGATGTCCTCTAAAGgtaaataatt ... aaacggttagGCAATGTTCTTCGGTGTGATGTGACGGGGAAGGTTTTAATGAAATGTTTCC