Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACTTTTTTGACACAATCTCGTGCAATCAACTTGACCGTGTGGCAAGAAGCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttcacatattctatagccaccaacccaagttctgaaactattcttctccaatcgcaatagtgtttgctgatggagtttttgctctctttatctttttattcag

Basic information

species Arabidopsis thaliana
transcript AT5G45330.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116433931|gb|EG476523.1|EG476523
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
EST: gi|116389885|gb|EG432477.1|EG432477
EST:     GCGGACAACAACACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
EST: gi|116389861|gb|EG432453.1|EG432453
EST:     GCGGACAACAACACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
EST: gi|116389763|gb|EG432355.1|EG432355
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
EST: gi|116389824|gb|EG432416.1|EG432416
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATA
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATA
EST: gi|116389847|gb|EG432439.1|EG432439
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGGCAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
EST: gi|116389931|gb|EG432523.1|EG432523
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
EST: gi|116389903|gb|EG432495.1|EG432495
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
EST: gi|86059877|gb|DR355634.1|DR355634
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACATATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACC
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACC
EST: gi|116389827|gb|EG432419.1|EG432419
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
EST: gi|116389794|gb|EG432386.1|EG432386
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
EST: gi|116433932|gb|EG476524.1|EG476524
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
EST: gi|116389969|gb|EG432561.1|EG432561
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
EST: gi|116389929|gb|EG432521.1|EG432521
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
EST: gi|116433930|gb|EG476522.1|EG476522
EST:     GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAG                         GCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT
genomic: GCGGACAACAGCACAACCAGTTTCCCGAACACATGAGACAAGTTCCTGAGgtttgtttca ... ttttattcagGCATTTGGTAATAATTTTCAAAGGCCACCTCCACTACAACCAGGTCAGGGT