1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAAAATGCAATGGATGAGTTTCTCATATCGAAAAGCTTACCTCTGAGATCTGGAGTGCAAGAgtgagtcacgtagatatctctttcaaactgtagcaaagaactttagatttttttcttgtacttgtaagttgtaaattcaaacgatttcacctttttgagctgtag
species | Arabidopsis thaliana |
transcript | AT5G45170.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTCATATCGAAAAGCTTACCTCTGAGATCTGGAGTGCAAGA ATTTATCGATAATGCATACGCGGAGAAAGTACCGGTTGCTATCGTAACAGCEST: gi|116478591|gb|EG521183.1|EG521183
genomic: TCTCATATCGAAAAGCTTACCTCTGAGATCTGGAGTGCAAGAgtgagtcacg ... tgagctgtagATTTATCGATAATGCATACGCGGAGAAAGTACCGGTTGCTATCGTAACAGC
EST: GATGAGTTTCTCATATCGAAAAGCTTACCTCTGAGATCTGGAGTGCAAGA ATTTATCGATAATGCATATGCGGAGAAAGTACCGGTTGCTATCGTAACAGCEST: gi|116478590|gb|EG521182.1|EG521182
genomic: GATGAGTTTCTCATATCGAAAAGCTTACCTCTGAGATCTGGAGTGCAAGAgtgagtcacg ... tgagctgtagATTTATCGATAATGCATACGCGGAGAAAGTACCGGTTGCTATCGTAACAGC
EST: GATGAGTTTCTCATATCGAAAAGCTTACCTCTGAGATCTGGAGTGCAAGA ATTTATCGATAATGCATATGCGGAGAAAGTACCGGTTGCTATCGTAACAGC
genomic: GATGAGTTTCTCATATCGAAAAGCTTACCTCTGAGATCTGGAGTGCAAGAgtgagtcacg ... tgagctgtagATTTATCGATAATGCATACGCGGAGAAAGTACCGGTTGCTATCGTAACAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAATGCAATGGATGAGTTTCTCATATCGAAAAGCTTACCTCTGAGATCTGGAGTGCAAGAgtgagtcacgtagatatctctttcaaactgtagcaaagaactttagatttttttcttgtacttgtaagttgtaaattcaaacgatttcacctttttgagctgtag
- - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA