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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATTGAGGTTGTGCGTGTTGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAATGCAAATTCTGTTCTGCGCCAGgtaagattttatagatatgatgagccaaccattcaatttatatctgtcatgtcatataagagttccatatgtagtgtgttactccacaaactgcgaaaga...

Basic information

species Arabidopsis thaliana
transcript AT5G36230.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G36230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os11g21990.1 (Oryza sativa), 5'ss of exon 6
TGACATTGAGGTTGTGCGTGTTGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAATGCAAATTCTGTTCTGCGCCAGgtaagattttata----gatatgatgagccaaccattcaatttatatctgtcatgt-catataagagttccatatgtagtgtgttactccacaaactgcgaaaga
||| || |||||||| ||  |  | |||||||   | ||||| ||||||||||||||||| || |||||||| |||||| | ||||| |  || || |||||||   ||| ||    |  ||        || || |      |||  ||  ||||  ||||   |||||    | |    |  ||||       || | |    
TGATATAGAGGTTGTTCGCATGCTATGGGATGTGCTGATGGAGGCTGTTCAGTGGTCTGGGAAGAACCAGCAACAAAATTCTAATTCAGCACTTCGGCAGgtaaatctttttattttggcattgattttaaagcagttgtgggatacttggaatgtgtatatcttagttcagcttctgaaattctactttt--gcctactag---

upper sequence: AT5G36230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G012416_T04 (Zea mays), 5'ss of exon 6
TGACATTGAGGTTGTGCGTGTTGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAATGCAAATTCTGTTCTGCGCCAGgtaagatt-ttatagatatgatgagccaaccattcaattta-tatctgtcatg---tcatataagagttccatatgtagtgtgttactccacaaactgcgaaaga
|||  | |||||| | ||  |  | |||||||   | ||||| ||||||||||||||||| || ||||||||||||||| | ||| | |  ||  | ||||||   || ||| |  | || |      || | |  ||| | || ||  ||||   || | |    ||   |  |  | |   ||  |  |  |  |   |    
TGATTTAGAGGTTATTCGCATGTTGTGGGATGTGCTCATGGAGGCTGTTCAGTGGTCTGGGAAGAACCAGCAGCAAAATTCCAATGCAGCACTTAGGCAGgtagtgttgttaaacttttgctttctttacaagtacattgagtacctaacatgaactcttgttgatgtatgacttacattac-ttgttttagtacttttaa----

upper sequence: AT5G36230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 6
-TGACATTGAGGTTGTGCGTGTTGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAATGCAAATTCTGTTCTGCGCCAGgtaagattttatagatatgatgagccaaccattcaatttatatctgtcatgtcatataagagttccatatgtagtgtgttactccacaaactgcgaaaga-----
  || |||||||| |||||  |  | ||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||| | |  || || ||||||   |  | |||||||  ||     |     |||||||||| ||   ||      ||   || |   |||  |   | ||  |    |||  |          
CGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggta---tcctttagatattttgcatgtatg--ccaatttatatttgct-tgcttcgaaatttttacccttgttctcattgacctcgtctacttaggtttcttatt

upper sequence: AT5G36230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G38530.1 (Glycine max), 5'ss of exon 6
TGACATTGAGGTTGTGCGTGTTGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAATGCAAATTCTGTTCTGCGCCAGgtaagattt---tatagatatgatgagccaaccattcaatttatatctgtcatgtcatataagagttccatatgtagtgtgttactccacaaactgcgaaaga
 ||||||||||| |||||  |  | ||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||| ||| | |  || || ||||||   |||   |||     |  |  |||||      |  || | |   | | |   | | | | |||  | | |  || | |    ||    ||  |     
GGACATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCAGgtatcctttggatattttgcttgtatgccaaatgcagaccttgtgtacttgaggagttttgaaaattct-tgttttatgagcttagtcaagttctaggttt--

upper sequence: AT5G36230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv04s0023g00670.t01 (Vitis vinifera), 5'ss of exon 7
TGACATTGAGGTTGTGCGTGTTGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAATGCAAATTCTGTTCTGCGCCAGgtaagattttatagatatgatgagccaaccattcaatttatatctgtca--tgtcatata---agagttccatatgtagtgtg-ttactccacaaactgcgaaaga
 |||||||||||||||||  |  | |||||||   |||||||||| |||||||||||||| |||||||||||||| ||||| ||| | | ||| ||||||||| | ||||     ||| ||      |    |  |   | | |  | |  |||  ||||   | | || | | | ||| ||| ||   ||| | |    |     
AGACATTGAGGTTGTGCGAATCTTGTGGGATGTCATAATGGATGCAGTTCAGTGGTCTGGGAAAAACCAGCAGCAGAATGCCAATGCAGCTCTACGCCAGgtatgcttttg-gtgtattatttctttatttctgtaccaaaaacatttaaatgttctatattcatatttgcttgtatagagtgattgagccaaagatattg-----