1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGgtataaacaaacatagtaacacctactcgcagctttaagacaattgtttctttaatgtattgggaaaatccgccaacattatgtatttttttggtccag
species | Arabidopsis thaliana |
transcript | AT5G27470.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCCGACTGAGCTTCCCCTAAG ATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGEST: gi|125303581|gb|EL317666.1|EL317666
genomic: TCCGACTGAGCTTCCCCTAAGgtataaacaa ... tttggtccagATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAG
EST: TCATCCGACTGAGCTTCCCCTAAG ATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGEST: gi|86059858|gb|DR355615.1|DR355615
genomic: TCATCCGACTGAGCTTCCCCTAAGgtataaacaa ... tttggtccagATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAG
EST: TGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAG ATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGEST: gi|125270023|gb|EL284108.1|EL284108
genomic: TGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGgtataaacaa ... tttggtccagATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAG
EST: TGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAG ATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACAEST: gi|47831831|gb|CK121515.1|CK121515
genomic: TGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGgtataaacaa ... tttggtccagATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACA
EST: TGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAG ATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGEST: gi|124740221|gb|EH831383.1|EH831383
genomic: TGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGgtataaacaa ... tttggtccagATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAG
EST: GACTGAGCTTCCCCTAAG ATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAG
genomic: GACTGAGCTTCCCCTAAGgtataaacaa ... tttggtccagATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGgtataaacaaacatagtaacacctactcgcagctttaagacaattgtttctttaatgtattgggaaaatccgccaacattatgtatttttttggtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT