1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAATTACTACTTCTACGAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAGgtctctgctgcaaaacacacatttgattactcctcgacattcatatttcgagattcattactcactctgcgtctctttcttaatcttgaaaag
species | Arabidopsis thaliana |
transcript | AT5G27390.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAG GTTTATATCGCTGGAGCAGCTGCACCGGAATCCAAATGGAAAGACGATGAGEST: gi|86085615|gb|DR381374.1|DR381374
genomic: GTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAGgtctctgctg ... tcttgaaaagGTTTATATCGCTGGAGCAGCTGCACCGGAATCCAAATGGAAAGACGATGAG
EST: GTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAG GTTTATATCGCTGGAGCAGCTGCACCGGAATCCAAATGGAAAGACGATGAGEST: gi|19799686|gb|AU230976.1|AU230976
genomic: GTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAGgtctctgctg ... tcttgaaaagGTTTATATCGCTGGAGCAGCTGCACCGGAATCCAAATGGAAAGACGATGAG
EST: GTAGAGATGAAGAACGCATAGCTCTATTAGCCTCTTTGAACAGAGGGAAGG GTTTATATCGCTGGAGCAGCTCCACCGGAATCCAAATGGAAAGACGATGAEST: gi|164192451|gb|ES030431.1|ES030431
genomic: GTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAA-Ggtctctgctg ... tcttgaaaagGTTTATATCGCTGGAGCAGCTGCACCGGAATCCAAATGGAAAGACGATGA
EST: GTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAG GTTTATATCGCTGGAGCAGC
genomic: GTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAGgtctctgctg ... tcttgaaaagGTTTATATCGCTGGAGCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATTACTACTTCTACGAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAGgtctctgctgcaaaacacacatttgattactcctcgacattcatatttcgagattcattactcactctgcgtctctttcttaatcttgaaaag
- - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - AAGAAC