1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGATTCAAAGAAATGAAAGAAATGCACGGAGCAAGCGGCCGCGATGAGAGGAAGAAACGAGAGCAGCAACGTCAAGAGAGGGAGATGACTAAAATgtgctcaaaacgtttctagtctctgttaccttttacttgtttctaaagattttgtatgcattggacgtaaacccgaatttttcttttaactttctag
species | Arabidopsis thaliana |
transcript | AT5G26610.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGAGGAAGAAACGAGAGCAGCAACGTCAAGAGAGGGAGATGACTAAAAT GGCTGATGCTCGCAAACAACATCAGATGCAACAGAGCCAGCAAGAAGTCCCEST: gi|116485269|gb|EG527861.1|EG527861
genomic: GAGAGGAAGAAACGAGAGCAGCAACGTCAAGAGAGGGAGATGACTAAAATgtgctcaaaa ... aactttctagGGCTGATGCTCGCAAACAACATCAGATGCAACAGAGCCAGCAAGAAGTCCC
EST: GTGAGGAAGAAACGAGAGCAGCAACGTCAAGAGAGGGAGATGACTAAAAT GGCTGATGCTCGCAAACAACATCAGATGCAACAGAGCCAGCAAGAAGTCCCEST: gi|116485278|gb|EG527870.1|EG527870
genomic: GAGAGGAAGAAACGAGAGCAGCAACGTCAAGAGAGGGAGATGACTAAAATgtgctcaaaa ... aactttctagGGCTGATGCTCGCAAACAACATCAGATGCAACAGAGCCAGCAAGAAGTCCC
EST: GTGAGGAAGAAACGAGAGCGGCAACGTCAAGAGAGGGAGATGACTAAAAT GGCTGATGCTCGCAAACAACATCAGATGCAACAGAGCCAGCAAGAAGTCCCEST: gi|164043790|gb|ES185014.1|ES185014
genomic: GAGAGGAAGAAACGAGAGCAGCAACGTCAAGAGAGGGAGATGACTAAAATgtgctcaaaa ... aactttctagGGCTGATGCTCGCAAACAACATCAGATGCAACAGAGCCAGCAAGAAGTCCC
EST: GCAGCAACGTCAAGAGAGGGAGATGACTAAAAT GGCTGATGCTCGCAAACAACATCAGATGCAACAGAGCCAGCAAGAAGTCCCEST: gi|164049123|gb|ES187438.1|ES187438
genomic: GCAGCAACGTCAAGAGAGGGAGATGACTAAAATgtgctcaaaa ... aactttctagGGCTGATGCTCGCAAACAACATCAGATGCAACAGAGCCAGCAAGAAGTCCC
EST: GCAACGTCAAGANAGGGAGATGACTAAAAT GGCTGATGCTCGCAAACAACATCAGATGCAACAGAGCCAGCAAGAAGTCCC
genomic: GCAACGTCAAGAGAGGGAGATGACTAAAATgtgctcaaaa ... aactttctagGGCTGATGCTCGCAAACAACATCAGATGCAACAGAGCCAGCAAGAAGTCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATTCAAAGAAATGAAAGAAATGCACGGAGCAAGCGGCCGCGATGAGAGGAAGAAACGAGAGCAGCAACGTCAAGAGAGGGAGATGACTAAAATgtgctcaaaacgtttctagtctctgttaccttttacttgtttctaaagattttgtatgcattggacgtaaacccgaatttttcttttaactttctag
- - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG