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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGCTACCTGATGATTTTGATCCCAGTGGGAGGCCAGGATCGTTTGACGATGGTGACCCACAAACTACGAATCTGTATGTTGGGAATCTGTCCCCAAAGgtgttttttcttttcttacttggatcatatgttgttttctctcgccattgtattcttaatattcataaggtataattttatgctcacgtag

Basic information

species Arabidopsis thaliana
transcript AT5G25060.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G25060.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 6
TGAGCTACCTGATGATTTTGATCCCAGTGGGAGGC---CAGGATCGTTTGACGATGGTGACCCACAAACTACGAATCTGTATGTTGGGAATCTGTCCCCAAAGgtgttttttctt-ttcttacttg---gatcatatgttgttttctctcgccattgtattctt-------aatattcataaggtataat----tttatgctcacgtag
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---GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggatgctcaattctctgttattcttttactctttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag