Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGTTGATAATAAGTGATTCTTTGAACCATAGTTCTATTGTCAATGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACAgtaagcatttgttgtgtttcagcttcagaggttctttccatataatggatggcttacatgtatattctcttgcttgtgtttcttag

Basic information

species Arabidopsis thaliana
transcript AT5G23670.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 6
GGAGGGTTGATAATAAGTGATTCTTTGAACCATAGTTCTATTGTCAATGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACAgtaagcatt--tgttgtgtttcagcttcagaggttctttccatataatg-------gatggcttacatgtatattctcttgcttgtgtttc--ttag---
||||| || || || |||||||| ||||| ||||| || ||||| |||||||||||||| |||||||| ||||| ||||||||||| ||||| ||||||  ||  ||| |  | |  | ||   |  || |    |||| |||       | || ||||  |  |       |   |   | ||   |||    
GGAGGCTTAATTATTAGTGATTCCTTGAATCATAGCTCCATTGTGAATGGTGCTCGAGGATCTGGAGCTACTATTCGTGTTTTCCAACATAATAgtaagtcttgatgtggcatatatggtttttactttttaaaaatatgatgcctataaggtgtcttagctagagggcagttaaatctggcttgagttaaagc

upper sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 6
GGAGGGTTGATAATAAGTGATTCTTTGAACCATAGTTCTATTGTCAATGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACAgtaagcatttgttgtgtttcagcttcagaggttctttccatataatggatggcttacatgtatattctcttgcttgtgtttcttag---------------
|| ||||||||||| ||||||||||||||||| |  || |||||||||||||||||||| || ||||| ||  | || |||||||| || || |||| |    | |||  |||    ||  |  ||   ||  |    ||| |      |  ||  | ||||  ||  | || ||||  |               
GGGGGGTTGATAATTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGTGCTCGAGGATCAGGAGCTACCGTTCGAGTTTTCCAACACAATAgtatgttgatattgcatttgtttttttggagtaaattt-accctatgaaacatacatttgagtgttcttatggatatggttctatgtcatctttcttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059362|gb|DR355119.1|DR355119
EST:     TGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACA                         CGCCTTCCCATTTGGAACGAGTTTTGAGAGAACAAATTGCAGAAGGTCAAC
genomic: TGGTGCTCGAGGTTCTGGAGCCACTATCCGTGTTTTCCAGCATAACAgtaagcattt ... tgtttcttagCGCCTTCCCATTTGGAACGAGTTTTGAGAGAACAAATTGCAGAAGGTCAAC