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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCAGAGATGCAGAGCAATATAGACAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCGgtatcacattttctgtttcaactcgtatattttggctatgttttccttggattaatccttcacatgcatgtggctttggatag

Basic information

species Arabidopsis thaliana
transcript AT5G23510.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23510.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 17
ATCCAGAGATGCAGAGCAATATAGACAAGACTCTTCATACTGGTCATGCTTCATACAAAGTTTCTCTTGCGgtatcacattttctgtttcaactcgtatattttgg--ctatgttttccttggatt-------aatccttcacatgcatgtggctttggatag---------------------------------------------
|| | || ||||||||| | ||||| ||||| |||  |||||||||| ||||||||||||| || ||  |||||| ||  || |       || | ||  || |    || ||||   ||||  ||       ||  |||  || | |  |   |||   ||                                              
ATTCTGAAATGCAGAGCCACATAGAGAAGACCCTTGTTACTGGTCATACTTCATACAAAGTATCCCTGTCGgtatgactattacaacaaatacccctagtttataattctttgttgatcttgttttgctatcaaagtcttatcaggaacatatgtttttttaatttcaccttcttaaagagcttagcctgaatcttttaattttgcag