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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATTTAACAGCTGGAAAACTGCTGACCGAGTTTAAGAGTCATGAAGGGCAAATTCAAAGCCTAGATTTTCATCCTCATGAATTCCTACTGGCAACAGgtttgtattactcttaaaaatttctaacaccaacacaaaataaaacttctaggctaagagtgtctgatcacaactgtattgcggttaccagcccagccca...

Basic information

species Arabidopsis thaliana
transcript AT5G23430.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 5'ss of exon 5
TGGGATTTAACAGCTGGAAAACTGCTGACCGAGTTTAAGAGTCATGAAGGGCAAATTCAAAGCCTAGATTTTCATCCTCATGAATTCCTACTGGCAACAGgtttgtattactcttaaaaatttctaacaccaacacaaaataaaacttctaggctaagagtgtctgatcaca-actgtattgcggttaccagcccagccca----
|||||| | |||||||||||  |  |    || || ||| |||||||||| || |||||  || ||||||| ||||| ||||| ||||| ||||||||||||| |  | |    | | |||  ||||  |  ||||  | | |      |    |       | || |   | |  ||| | | ||||    |  | | |     
TGGGATCTGACAGCTGGAAAGTTATTACATGATTTCAAGTGTCATGAAGGCCAGATTCAGTGCATAGATTTCCATCCCCATGAGTTCCTTCTGGCAACAGgttaggttcagatgttacaatg-ctaat-ctgacacttagtcatcaacttttctttgacccttttggttgtacagcgtagt-ctgttat--acttaactcttggg

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 5
TGGGATTTAACAGCTGGAAAACTGCTGACCGAGTTTAAGAGTCATGAAGGGCAAATTCAAAGCCTAGATTTTCATCCTCATGAATTCCTACTGGCAACAGgtttgtattactcttaaaaatttctaacaccaacacaaaataaaacttctaggctaagagtgtctgatcacaactgtattgcggttaccagcccagccca---
|||||| | |||||||||||  |  |    || || ||| ||||||| || || || ||  || ||||||||||||| ||||| ||||| ||||||||||||| |  | |   || | |||   || |  |  |  ||     ||||| |    |       | || |   |  | | |    |||    |   |  |     
TGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAACAGgttaggttcagaatttacaatgcatatctacttcttaactgttaacttttc--tttgtcccttttggttgta-ttatgtacttgtttatggttaaatcttgga

upper sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 5'ss of exon 5
TGGGATTTAACAGCTGGAAAACTGCTGACCGAGTTTAAGAGTCATGAAGGGCAAATTCAAAGCCTAGATTTTCATCCTCATGAATTCCTACTGGCAACAGgtttgtattactcttaaaaatttc-taacaccaacacaaaataaaacttctaggctaagagtgtctgatcacaactgtattgcggttaccagcccagccca
|||||| | || ||||||||  || ||  ||| || || |||||||| || ||  ||||  || |||||||||||||||||||||| || ||||||||||||  | | |  | ||  | | | | |  |     | |  | |   |    ||     | | |   |  |    | || ||      |  ||     ||   
TGGGATCTGACTGCTGGAAAGTTGTTGCACGATTTCAAAAGTCATGAGGGCCAGCTTCAGTGCATAGATTTTCATCCTCATGAATTTCTGCTGGCAACAGgtcagaaatcttattgtatactgcattccgtgttctcccatttctatgattaaatgcaaatttcattttgtttattgcatgcaatctctcactatggcat-