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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAGGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttgtcttaactcggttaatacgttcaatattttttaatcacatccttttcccaatctcatgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttgccccagctttggtatgttgtggttgttggatacttatatatctttggcagtacag

Basic information

species Arabidopsis thaliana
transcript AT5G22780.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G137236_T01 (Zea mays), 5'ss of exon 7
TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAGGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttgtcttaactcggttaatacgttcaatattttttaatcacatccttttcccaatctcatgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttgccccagctttggtatgttgtggttgttggatacttatatatctttggcagtacag
|||||| ||||||||||| | |||||| ||  |  | || || || || ||| |||| || |||||||| |||||||| || |||||||||||||| |||||  ||  |  |    || ||    |||  ||   || ||| || | |  ||    | |||   |  |||  |  |  || || | |||  |  ||   ||   | | |  |                                                     
TTGTCTTCCTAAATGTGTGAGAATATTGGAGAGGTTAGCAAGAAATCAAGATATTCCACAAGAGTACACTTACTATGGAATTCCATCTCCTTGGCTTCAGgtacgtacttccct--ttcatg---tcatcatccattcatc-cagcttgatc----tatcagtaaaattaggc--tagatatgtatttaattactggtcattaggccgttac-----------------------------------------------------

upper sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 6
TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAGGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttgtcttaactcggttaatacgttcaatattttttaatcacatccttttcccaatctcatgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttgccccagctttggtatgttgtggttgttggatacttatatatctttggcagtacag
|||||| ||||| ||| ||||||| |||||||| |||||||||||||||||| | || || || ||||| ||||| || ||||||||||| ||||| |||||||||   || |     ||||  ||  |    |  || ||  | |   || |   | |   | |    |||  ||  |    |  ||  |||||  |     | | |  ||     ||| || | |     || |||  ||||  ||                 
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgt---aaatttaggaatatttttgaa---tgctactcttaccagcttgcttttattgagaaccaaaaatgttgaactaaattttttcttatccagc---aagttaacctt--ttttagtgtttaacaatttttgcttact-gtag----------------

upper sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G05410.1 (Glycine max), 5'ss of exon 6
TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAGGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttg------tcttaactcggttaatacgtt-caatatt--------ttttaatcacatccttttcccaatctcatgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttgccccagctttggtatgttgtggttgttggatacttatatatctttggc-agtacag
|||||| ||||| ||| ||||||| |||||||| |||||||||||||||||| | || || || ||||| ||||| || ||||||||||| ||||| ||||||||      | |    ||    ||||  || |  ||||        |||||   | ||  ||        ||| | ||  ||   | |||  || |||   |   | |  || || |   || |      |   | | |||    || ||   |  |||   || ||||   | |  ||
TTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGgtttgtgaatttttcttttcatcaaatatatttctgtattggcttgggttttaggaagatttttgaatgctactcttacagcttg--cttttattgagaaccaaaagtgttgaactaaattttttctta---tccagcaagttaaccttttttagtgtttaacaatttttgcttaatgtag

upper sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 6
TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAGGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttgtcttaactcggttaatacgttcaatattttttaatcacatccttttcccaatctcatgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttgccccagctttggtatgttgtggttgttggatacttatatatctttggcagtacag
|||||| || || ||||| || ||  | ||  | ||||||||||| ||||||||||| || || ||||| |||||||| |||||| |||| ||||| ||||||||| |                  | || || |||| | | |||| |     |||   |||   |  ||| |    ||   ||  |     |  || | | |  |||    ||||   || |                                         
TTGTCTCCCAAAGTGTGTTAAGATTCTGGAGAGGCTTGCTAGGAATCAGGATGTTCCACAAGAATACACTTACTATGGTATCCCAACTCCCTGGCTTCAGgtttgtgtg----------------cccattttctttactta-atccctaaagtaat---atgggctgaaaaaaaaaaataacaagatga---aaaaataaaaaacctttgttcagcca-ggca-----------------------------------------

upper sequence: AT5G22780.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ34224 (Selaginella moellendorffii), 5'ss of exon 6
TTGTCTACCTAAATGTGTCAAAATATTAGAACGCCTTGCTAGGAACCAGGATGTTCCTCAGGAGTACACATACTATGGCATCCCATCTCCTTGGCTCCAGgtttgtcttaactcggttaatacgttcaatattttttaatcacatccttttcccaatctcatgcattttaaacattttatgtgaaattagcttatgaaaatagaggcttgccccagctttggtatgttgtggttgttggatacttatatatctttggcagtacag
 ||  |  | ||||| ||     |  | || ||| |  | |||| ||| ||| |||||||||||||||||||||| || || |||||||||||||||||||||||| ||   ||| |   |   | |  |    |||    ||| | | ||  |  | ||     | || |    |||  |                                                                                    
CTGCGTTTCAAAATGCGTTCGTGTTCTGGAGCGCTTAACCAGGAGCCAAGATATTCCTCAGGAGTACACATACTACGGTATTCCATCTCCTTGGCTCCAGgtttgtttttcgtcgat--gtttttgcggttgactttgggaacaccatatttactctttc-----tgtttagtgatttgagcag---------------------------------------------------------------------------------