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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAACTTGGGGGAACCATCCCAAAGTTTTCAACTTGGCAGGCTTGTCTGTGGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAGgttgattcttaactttccattaatttttgttttcatcttcatgtggttgcactgacattaatttagtcatggttattgcttgattatccatctactctac...

Basic information

species Arabidopsis thaliana
transcript AT5G19550.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19550.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os01g55540.1 (Oryza sativa), 5'ss of exon 6
CCAACTTGGGGGAACCATCCCAAAGTTTTCAACTTGGCAGGCTTGTCTGTGGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAGgt-tgattcttaactttccattaatttttgttttcatcttcatgtggttgcactgacattaatttagtcatggttattgcttgattatccatctactctac--------
||||| |||||||| || |||||||| ||||  || || ||| || ||||   |  || ||||||||||||||||||||||||||| || || ||| |||||   | | | || |||||||  |      | ||| | |  |   | ||      |   |  |||   | ||  |    |||||| |   || |  | |          
CCAACCTGGGGGAATCACCCCAAAGTGTTCACTTTAGCTGGCCTGACTGTTAGGAGTTACCGCTACTATGATCCTGCAACCCGTGGACTGGATTTCCAAGgtaccaatttcaattttccatggaggaacttgttcttatgaagaagattaattgcaagattgtttgcacctgtctg--acttgatcaaggatgtgttttcgtgttacag

upper sequence: AT5G19550.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G506218_T01 (Zea mays), 5'ss of exon 1
CCAACTTGGGGGAACCATCCCAAAGTTTTCAACTTGGCAGGCTTGTCTGTGGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAGgt-tgattcttaactttccattaatttttgttttcatcttc-----atgtggttgcactg---acatt----aatttagt-catggttattgcttg---attatccatctactctac-----------------------------
||||| | ||| || || ||||||||||||| |    |  | ||| ||||   |   | |  ||||||||||||||| |||||  ||||||||||||||| | ||  | | |  ||||     |  | ||||   ||  |      |||||  |   ||    |||||    ||| || |  ||| |   |  |||   |||||       |||| |                             
CCAACCTCGGGAAATCACCCCAAAGTTTTCACCAAATCTAGATTGACTGTTAGGAGCTACTACTACTATGATCCTGCGACCCGCTGTCTTGACTTCAAAGttatggatttcatttttcatgctagatctgttagaatgctttaataatgtgaatatgctagacacattcgcaaatgtattatatgttctatctttgcaaattatgtcatggctctgccattgacccaaatttgttttgctttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116439194|gb|EG481786.1|EG481786
EST:     GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAG                         GCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTC
genomic: GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAGgttgattctt ... aaaaaaacagGCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTC
EST: gi|164237982|gb|ES129770.1|ES129770
EST:     GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAG                         GCTTGCTCGAGGATCTTGGCGCTGCACCATC
genomic: GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAGgttgattctt ... aaaaaaacagGCTTGCTCGAGGATCTTGGCGCTGCACCATC
EST: gi|116439128|gb|EG481720.1|EG481720
EST:     GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAG                         GCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTC
genomic: GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAGgttgattctt ... aaaaaaacagGCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTC
EST: gi|116442567|gb|EG485159.1|EG485159
EST:     GGAGTATTTCCGCTACTACGATCCTGCAACCCGTGGTCTTGACTTCAAAG                         GCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTC
genomic: GGAGTATTTCCGCTACTATGATCCTGCAACCCGTGGTCTTGACTTCAAAGgttgattctt ... aaaaaaacagGCTTGCTCGAGGATCTTGGCGCTGCACCATCTGGAGCTATTGTCTTACTTC