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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaagtcataatagctcttacatttgaatggttgcatttatatgcacctggcaggattctgagatatattttaaataatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G18620.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 6
AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaagtc--ataatagctcttacatttgaatgg--ttgcatttatatgcacctggcaggattctgagatatattttaaataatgcag
 ||||| ||||| || || ||||| ||||||||||| ||||| |  || ||||||||||| ||||||||| | || ||  | || || ||||| ||||| ||||  |  ||  || ||||  ||||    ||   ||    |  |||    ||  ||   || | | |  |  |             
TGTTGCACCAAAGTCCACTCTTGGGAACTGGATGAAGGAAATACAACGGTTTTGTCCTGTTCTGCGTGCTATCAAGTTCTTAGGAAACCCCGAAGAAAGGgtaatccccatgttatctctgtcattcatgtgaacttcttgtggtatattgctaacatatttgtcatacttggtcag----------

upper sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 6
AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaag-tcataatagctc--ttacatt----tg--aatggttgca-tttatatgcacctggcaggattctg--agatatattttaaataatgcag
 |||||||||||||| || ||||| || ||||||||||| ||||| || ||||||||||| || |||||  | || ||||| || || ||||| ||||| |||||  |||  |  ||   ||  |||    ||  || |||| || || ||    |  | | |   || |     ||   ||| |  |  | |||
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATCAAGTTTCTTGGCAACCCCGATGAAAGGgtaagaccatctttactgagttgaattattgtggcaaaggttacagttgatgcttaatttgaactgtttttcctaatggttttgacttgctacag

upper sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 6
AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaa-----gtcataatagctc---ttacat-ttgaatggttgca-tttatatgcacctggcaggattctgagatata-ttttaaataa-tgcag
 |||||||||||||| || ||||| || ||||||||||||||||| || ||||| |||||  | |||||||| || || || || ||||| || ||||| ||||     | | |  |    |   |||| | ||  | | || || || ||     | |   | | || ||    ||  ||| |||||| | |||
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGTGCTGTAAAGTTCCTTGGCAATCCTGACGAAAGGgtaagactagccttgctgaaccaaattacttgttttaagattacaattaatgcttgcttctgatgcttttgtctaatggtttcaaataacttcag

upper sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 6
AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaa-----gtcataatagctc---ttacat-ttgaatggttgca-tttatatgcacctggcaggattctgagatata-ttttaaataa-tgcag
 |||||||||||||| || ||||| || ||||||||||||||||| || ||||| |||||  | || ||| | || || || || ||||| || ||||| ||||     | | |  |    |   |||| | ||  | | ||||| || ||     | |   | | || ||    ||  |||||||||| |||||
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGCGCTATAAAGTTCCTTGGCAATCCTGACGAAAGGgtaagactagcctttctgaaccaaattacttgttttaagattgcaattaatgcttgcttctgatgcttttgtctaatggttttaaataactgcag

upper sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 6
AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaag-tcataatagctc--ttacatt----tg--aatggttgca-tttatatgcacctggcaggattctg--agatatattttaaataatgcag
 |||||||||||||| || ||||| || ||||||||||| ||||| || ||||||||| | || |||||  | || ||||| || || || || ||||| |||||  |||  |  ||   ||  |||    ||  || |||| || || ||    |  | | |   || |     ||   ||| |  |  |||||
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGgtaagaccatcttttctgggttgaattattgtggcaaaggttacaattgatgcttaatttgaactgtttttcctaatggttttgacttgctgcag

upper sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaagtcataatagctcttacatttgaatggttgcatttatatgcac---ctggcaggattctgagatatattttaaataatgcag
 ||||| |||||||| || ||||| |||||||||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||| || ||||| ||  |||||    || ||    |  || |  ||   ||| |||  ||    |  ||     ||  | ||    ||      |||||
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtgtgtcattcaggccctgctttcagagtaattctttttttatttacagttttccactgcactttgctaacacttcgtctctgcag

upper sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ32950 (Selaginella moellendorffii), 5'ss of exon 5
AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaagtcataatagctcttacatttgaatggttgcatttatatgcacctggcaggattctgagatatattttaaataatgcag
 |||||||| || ||||| || |||||||||||||||||||||||    ||||||||  | || || || || || || | |||||  |  |||||||| ||| || | ||| | |  | | ||    | | |  ||     | |  |  |                                
GGTTGCTCCGAAGTCAACTCTGGGTAACTGGATGAATGAAATTCGGAAGTTTTGTCCCATTCTCCGAGCAGTCAAGTTCCACGGTACCCAGGAGGAAAGGgtatgtta-aatggttagt-ctttgtgcttgctaaatcatggtacttccag--------------------------------

upper sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ15818 (Selaginella moellendorffii), 5'ss of exon 5
AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaagtcataatagctcttacatttgaatggttgcatttatatgcacctggcaggattctgagatatattttaaataatgcag
 |||||||| || ||||| || |||||||||||||||||||||||    ||||||||  | || || || || || || | |||||  |  |||||||| ||| || |    |  | ||| || |   || ||||      |||   ||  |||                             
GGTTGCTCCGAAGTCAACTCTGGGTAACTGGATGAATGAAATTCGGAAGTTTTGTCCCATTCTCCGAGCAGTCAAGTTCCACGGTACCCAGGAGGAAAGGgtatgtta----aattgtta-atctttgtgcttgctaaatcatggtacttccag-----------------------------