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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTGAATGAGAAAAGCGATGTCTACAGCTTCGGGGTTGTACTCTTGGAAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAGgtaaaaaatttcgtaagaacctgcacaaacacataaactctgctgcctcaagagagtcttctgacatttcttctttttcattttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G18500.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18500.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G162702_T01 (Zea mays), 5'ss of exon 5
TCTTCTGAATGAGAAAAGCGATGTCTACAGCTTCGGGGTTGTACTCTTGGAAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAGgtaaaaaatttcgtaagaacctgcacaaacacata----aactctgctg-cctcaagagagtcttctgacatttcttctttttcattttgtag--------
 ||||| ||||| || || |||||||| ||||| |||||||| || ||||||||||| || |||||| ||||  | || |||| ||| ||  ||   ||||||| |  | ||  |    | |    ||  |  ||    | |  |  ||  ||  | |||   |    ||  |    || |  |   |||           
ACTTCTAAATGAAAAGAGTGATGTCTATAGCTTTGGGGTTGTTCTGTTGGAAGCTATTACAGGTAGAGATCCAATTGATTATGATCGCCCTACAAATGAGgtaatatttgtcaaatatccttttctaataatttatggcatccttattggtcttgatagaag-tggaaaccctaaccctataccgggttgggtgatgggtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164156709|gb|EL979504.1|EL979504
EST:     AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAG                         GTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAAC
genomic: AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAGgtaaaaaatt ... cattttgtagGTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAAC
EST: gi|164232001|gb|ES128395.1|ES128395
EST:     AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAG                         GTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAAC
genomic: AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAGgtaaaaaatt ... cattttgtagGTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAAC
EST: gi|124725473|gb|EH816875.1|EH816875
EST:     AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAG                         GTACATTTGGTGGAGTGGCTGAAGATGATGG
genomic: AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAGgtaaaaaatt ... cattttgtagGTACATTTGGTGGAGTGGCTGAAGATGATGG
EST: gi|164169162|gb|ES207560.1|ES207560
EST:     AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACC-GAG                         GTACATTTGGTGGAGTGGCTGAAG
genomic: AAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAGgtaaaaaatt ... cattttgtagGTACATTTGGTGGAGTGGCTGAAG