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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTCGTTCAGCAATCAGATTAGATATCTTTATTACAAAGTTAGATCTAATGGAACACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAAgtgagtttctacatcaaatcgttatggttaacttttaaatttttttgatctaatctgaacaatgttactattgcttctgtctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G18480.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124968392|gb|EL042352.1|EL042352
EST:     CACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAG                         CCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTT
genomic: CACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAAgtgagtttct ... ctgtctgcagCCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTT
EST: gi|124755816|gb|EH845946.1|EH845946
EST:     ATGGAACACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAA                         CCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTT
genomic: ATGGAACACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAAgtgagtttct ... ctgtctgcagCCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTT
EST: gi|125304868|gb|EL318953.1|EL318953
EST:     ATGGAACACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAA                         CCCCACAGTGGCAACGCACAGT
genomic: ATGGAACACTTGGTTATGGCGGTGTATCTACCATGAGTCCCAGCTATCAAgtgagtttct ... ctgtctgcagCCCCACAGTGGCAACGCACAGT
EST: gi|124973678|gb|EL047288.1|EL047288
EST:     ACTTGGTTATGGCGGTGTATCTACCATGTAGTCCCAGCTATCAA                         CCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTT
genomic: ACTTGGTTATGGCGGTGTATCTACCATG-AGTCCCAGCTATCAAgtgagtttct ... ctgtctgcagCCCCACAGTGGCAACGCACAGTCCAAGGTTCCTCAACACTTAGGCGCAGTT