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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGGACATGCTTGGTCCGAGTCTCTGGGATGTTTGGAATTCTTCGGGGCAATCgtaagcactcttctcctctcaccacacttccttctgattgcaagattcttgatttgattcatgttcgtgtcatgtggcag

Basic information

species Arabidopsis thaliana
transcript AT5G18190.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os03g57940.2 (Oryza sativa), 5'ss of exon 6
GTCATGGACATGCTTGGTCCGAGTCTCTGGGATGTTTGGAATTCTTCGGGGCAATCgtaagcactcttctcctctcaccacactt-ccttctgattgcaagattcttgatttgattcatgttcgtgtcatgtggcag----
|| ||||| ||||||||||| || ||||||||||| ||||||||   ||| ||  ||||||   ||   ||  ||     || |  ||  ||||||  |  | || | | |  |   |    | |   |  | |||     
GTAATGGATATGCTTGGTCCCAGCCTCTGGGATGTGTGGAATTCAGTGGGACAGGCgtaagt-ttcggatcacctttttgcattgaccacctgattttattactcctcactgaaaataacagcattggaacttgcaaacag

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 6
GTCATGGACATGCTTGGTCCGAGTCTCTGGGATGTTTGGAATTCTTCGGGGCAATCgtaa-----gcactcttc-tcctctcaccaca--cttccttctgat---tgcaagattcttgatttgattc-atgttcgtgtcatgtggcag---------------
||||||||||||||||| || ||||| |||||||| |||||||||   || |||  ||||     | || || | |  | | |  | |   |  ||| | ||   |||||  |  || |  |  | | || |  |   ||| |  ||                
GTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTGTTGGTCAACAgtaagatttgtaccctcccttttgttagtataggttcacttttaatagctgcaatttatttaaactcttcctatataagccccat-taacattttagttctggacag

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S229_69V6.1 (Physcomitrella patens), 5'ss of exon 4
GTCATGGACATGCTTGGTCCGAGTCTCTGGGATGTTTGGAATTCTTCGGGGCAATCgtaagcactcttctcctctcaccacacttccttctgattgcaagattcttgatttgattcatgttcgtgtcatgtggcag
|||||||| ||||| || || |||||||||||||||||||| |||| ||   || || ||| | |           |   ||  || ||||||||| |                                      
GTCATGGATATGCTCGGgccaagtctctgggatgtttggaactctttggattaagcgcaagtattt----------agtgcagctcgttctgattgaacag-----------------------------------

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 5'ss of exon 5
GTCATGGACATGCTTGGTCCGAGTCTCTGGGATGTTTGGAATTCTTCGGGGCAATCgtaagcactcttctcctctcaccacacttccttctgattgcaagattcttgatttg-attcatgttcgtgtca-tgtggcag------------------------
|||||||| |||||||| || ||||| |||||||||||||| ||||| || ||  ||||||      |||  |  ||   |  |||  |   ||     |    | |||    |||||  | | | | | ||||  |                         
GTCATGGATATGCTTGGGCCAAGTCTTTGGGATGTTTGGAACTCTTCAGGCCAGGCgtaagtgacgctctattgacag-gcttttcgcttgaataatgtggccttcgatcgacattcaattactttttactgtgaaactgaagttcgattatctttctgcag

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S39_28V6.1 (Physcomitrella patens), 5'ss of exon 2
GTCATGGACATGCTTGGTCCGAGTCTCTGGGATGTTTGGAATTCTTCGGGGCAATCgtaagcactcttctcctctcaccacacttccttctgattgcaagattcttgatttgattcatgttcgtgtcatgtggcag
 ||| ||| |||||||| || |||||||||||||||||||| ||||| |  ||| || ||| | |           |   ||  || |||| ||   |  | | |  |  |                         
ATCAGGGATATGCTTGGACCAAGTCTCTGGGATGTTTGGAACTCTTCAGATCAAGCgcaagtattt----------aaggcaactcgttctaatcaaacaagtatgtacatag-----------------------

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 5
GTCATGGACATGCTTGGTCCGAGTCTCTGGGATGTTTGGAATTCTTCGGGGCAATCgtaagcactcttctcctctcaccacacttccttctg--attgcaagattcttgatttgattcatgttcgtgtcatgtggcag--------------------------
|||||||| |||||||| || |||||||||||||| ||||| ||||| || ||| |||||| | | | || | || |       | | |||   ||| |      |  |  | | ||        |  ||      |                           
GTCATGGATATGCTTGGGCCAAGTCTCTGGGATGTCTGGAACTCTTCAGGTCAAGCgtaagtatt-tactaccctgatgttctcttcgtctattattactgctggcgaggatcgtttatcaccaattgcagagaaaaattgatcccgtaattttttttttgcag

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S1655_2V6.1 (Physcomitrella patens), 5'ss of exon 1
GTCATGGACATGCTTGGTCCGAGTCTCTGGGATGTTTGGAATTCTTCGGGG-CAATCgtaagcactcttctcctctcaccacacttccttctgattgcaagattcttgatttgattcatgttcgtgtcatgtggcag
  |||||| ||||| || || |||||| ||||||||||||| ||||||||| ||| || ||| | |           |   ||  || |||||||||                                        
--CATGGATATGCTCGGGCCAAGTCTCCGGGATGTTTGGAACTCTTCGGGGTCAAGCGCAAgtattt----------agggcagctcgttctgattgagcag-----------------------------------