1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGGGCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTGgtaatgcttacaaggctaagatttctaaaaaacagaacaccgttttctcttattttctagtttccattgtgtgaagtaattcactcgaggctttgatgttgaaccag
species | Arabidopsis thaliana |
transcript | AT5G18100.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTG GTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGATEST: gi|163993934|gb|ES003098.1|ES003098
genomic: GCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTGgtaatgctta ... gttgaaccagGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT
EST: CGCAGGCTCGAGAGTTGGATGTG GTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTT-GAGATEST: gi|164137809|gb|ES082978.1|ES082978
genomic: CGCAGGCTCGAGAGTTGGATGTGgtaatgctta ... gttgaaccagGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT
EST: GAGTTGGATGTG GTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGATEST: gi|19877759|gb|AU238590.1|AU238590
genomic: GAGTTGGATGTGgtaatgctta ... gttgaaccagGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT
EST: GCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTG GTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGATEST: gi|125274394|gb|EL288479.1|EL288479
genomic: GCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTGgtaatgctta ... gttgaaccagGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT
EST: CGCAGGCTCGAGAGTTGGATGTG GTATCATCGGACTTCAATCATCTGCGGATGCTAAACTAT-GCTTTTGAGAT
genomic: CGCAGGCTCGAGAGTTGGATGTGgtaatgctta ... gttgaaccagGTATCATCGGACTTCAATCATCTGCGGATGCTAAACTATAGCTTTTGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGGCACAAGCTTAGCAAATCAACTGGAAACGCAGGCTCGAGAGTTGGATGTGgtaatgcttacaaggctaagatttctaaaaaacagaacaccgttttctcttattttctagtttccattgtgtgaagtaattcactcgaggctttgatgttgaaccag
- - - CAAGCT