1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGGCCAGAGCAATTCTAGAAAACCCAACAGACAAGACAAAGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcctttcacctactgtttcttttgagtcgagaacaagtattgtgttttcatagactaatttcaaacactaaatgttaagtgaatcaatacttttttttttcag
species | Arabidopsis thaliana |
transcript | AT5G17770.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTCEST: gi|86082325|gb|DR378084.1|DR378084
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTCEST: gi|124902718|gb|EH976798.1|EH976798
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG GAAGAATTGGAGGGTCTTACTACCAATTEST: gi|124774437|gb|EH864566.1|EH864566
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATT
EST: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG GAAGAATTGGAGGGTCTTACTACCAAEST: gi|125301329|gb|EL315414.1|EL315414
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAA
EST: TTTACGCCAACGTCACATACGACGACATTCTCTTGAAG GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTCEST: gi|124764010|gb|EH854140.1|EH854140
genomic: TTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: CATACGACGACATTCTCTTGAAG GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTCEST: gi|86066425|gb|DR362182.1|DR362182
genomic: CATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTCEST: gi|164048173|gb|ES208085.1|ES208085
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: CATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTCEST: gi|86066436|gb|DR362193.1|DR362193
genomic: CATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAG GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTCEST: gi|86082753|gb|DR378512.1|DR378512
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: AGGTGCATCTCATTTACGCCAACGTCATATACGACGACATTCTCTTGAAG GAAGAATTGGAGGGTCTTACTACCAATTACCNTGAACAATTTAAAATCTTCEST: gi|164053715|gb|ES142915.1|ES142915
genomic: AGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
EST: GTCACATACGACGACATTCTCTTGAAG GAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
genomic: GTCACATACGACGACATTCTCTTGAAGgtaaaaagcc ... tttttttcagGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAACAATTTAAAATCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCCAGAGCAATTCTAGAAAACCCAACAGACAAGACAAAGGTGCATCTCATTTACGCCAACGTCACATACGACGACATTCTCTTGAAGgtaaaaagcctttcacctactgtttcttttgagtcgagaacaagtattgtgttttcatagactaatttcaaacactaaatgttaagtgaatcaatacttttttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG