1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGGAGAAACTTCATGAAAATGCAGCTTAAACGAGCAAGAATGTTCTTCGACGAAGCTGAGAAAGGCGTCACCGAGCTCAGTGCCGCTAGCAGATGGCCTgtaagtgtctctaaaacactcttcagccgcaagtttaccgtttacttatttcttttggatcgattttaaccccgaggacttggctgcaatgtttcag
species | Arabidopsis thaliana |
transcript | AT5G17230.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACGAAGCTGAGAAAGGCGTCACCGAGCTCAGTGCCGCTAGCAGATGGCCT GTATGGGCTTCATTGCTATTGTACAGGAGAATACTGGACGAEST: gi|124868728|gb|EH953165.1|EH953165
genomic: ACGAAGCTGAGAAAGGCGTCACCGAGCTCAGTGCCGCTAGCAGATGGCCTgtaagtgtct ... aatgtttcagGTATGGGCTTCATTGCTATTGTACAGGAGAATACTGGACGA
EST: CACCGAGCTCAGTGCCGCTAGCAGATGGCCT GTATGGGCTTCATTGCTATTGTACAGGAGAATACTGGACGAGATTGAAGCGEST: gi|124785159|gb|EH874838.1|EH874838
genomic: CACCGAGCTCAGTGCCGCTAGCAGATGGCCTgtaagtgtct ... aatgtttcagGTATGGGCTTCATTGCTATTGTACAGGAGAATACTGGACGAGATTGAAGCG
EST: AAGGCGTCACCGAGCTCAGTGCCGCTAGCAGATGGCCT GTATGGGCTTCATTGCTATTGTACAGGAGAATACTGGACGAGATTGAAGCGEST: gi|86076710|gb|DR372467.1|DR372467
genomic: AAGGCGTCACCGAGCTCAGTGCCGCTAGCAGATGGCCTgtaagtgtct ... aatgtttcagGTATGGGCTTCATTGCTATTGTACAGGAGAATACTGGACGAGATTGAAGCG
EST: ACGAAGCTGAGAAAGGCGTCACCGAGCTCAGTGCCGCTAGCAGATGGCCT GTATGGGCTTCATTGCTATTGTACAGGAGAATACTGGACGAGATTGAAGCG
genomic: ACGAAGCTGAGAAAGGCGTCACCGAGCTCAGTGCCGCTAGCAGATGGCCTgtaagtgtct ... aatgtttcagGTATGGGCTTCATTGCTATTGTACAGGAGAATACTGGACGAGATTGAAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGAGAAACTTCATGAAAATGCAGCTTAAACGAGCAAGAATGTTCTTCGACGAAGCTGAGAAAGGCGTCACCGAGCTCAGTGCCGCTAGCAGATGGCCTgtaagtgtctctaaaacactcttcagccgcaagtttaccgtttacttatttcttttggatcgattttaaccccgaggacttggctgcaatgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG