Sequence
atgc intronic sequence ATGC exonic sequenceAATGCACCAGTTTACCAGCTACTGAAGATTTTTCTTACTCAGAGGCTAGATGCATACATGGAATTCCAAAATGCGAATTCAGGATTTCTGCAAACATACGgtactgttcttatccctttaccgcttgacatgatcctcagatgaatcgaatccttcattctttagtgaacccataataagccatagacggtatctgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G15610.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G15610.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G06410.1 (Glycine max), 5'ss of exon 6
AATGCACCAGTTTACCAGCTACTGAAGATTTTTCTTACTCAGAGGCTAGATGCATACATGGAATTCCAAAATGCGAATTCAGGATTTCTGCAAACATACGgtactgttcttatccctttaccgcttgacatgatcctcagatgaatcgaatccttcattctttagtgaacccataataagccatag----acggtatctgcag
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TATGCTCTGTTATATCAGCTTCTTAAGATTTTTCTTACCCAGAGGCTAGATGCATACTTAGAATATCAAGCTGCAAATTCCACCTTGTTGAAAAACTATGgtaaa---catggatgattattgttttttaatagttgcatatgtaa-ggctctattatacgttatcttactatcaaaatgttttgatgttatgatgtttttag
upper sequence: AT5G15610.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G28080.2 (Glycine max), 5'ss of exon 5
AATGCACCAGTTTACCAGCTACTGAAGATTTTTCTTACTCAGAGGCTAGATGCATACATGGAATTCCAAAATGCGAATTCAGGATTTCTGCAAACATACGgtactgttcttatccctttaccgcttgacatgatcctcagatgaat-cgaatccttcattctttagtgaacccataataagcca----tagacggtatctgcag
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TATGCTCTGTTATATCAGCTTCTTAAGATTTTTCTTACCCAGAGGCTGGATGCATACATAGACTATCATGCTGCCAATTCCACATTGTTGAAAAGTTATGgtaagcaccg---cttatgaatgattatcatttatcttacatatacatggttcttttatactttgttactatcaaaatgttttgatgttatgatgctcttttag
upper sequence: AT5G15610.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G22090.1 (Glycine max), 5'ss of exon 6
AATGCACCAGTTTACCAGCTACTGAAGATTTTTCTTACTCAGAGGCTAGATGCATACATGGAATTCCAAAATGCGAATTCAGGATTTCTGCAAACATACGgta----ctgttcttatccctttaccgcttgacatgatcctcagatgaatcgaatccttcattctttagtgaacccataataagccatagacggtatc-tgcag------
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TATGCTCTGTTATATCAGCTTCTTAAGATTTTTCTTACCCAGAGGCTGGATGCATACTTAGACTATCATGCTGCCAATTCCACCTTGTTGAAAAGTTATGgtaagcactgtttatgaatgattatcatttatca--atagttacatatacagggttcttttctactttatgttactatctaaatgttttgatgttatgatgctcttttag
upper sequence: AT5G15610.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv14s0068g00220.t01 (Vitis vinifera), 5'ss of exon 6
AATGCACCAGTTTACCAGCTACTGAAGATTTTTCTTACTCAGAGGCTAGATGCATACATGGAATTCCAAAATGCGAATTCAGGATTTCTGCAAACATACGgta-ctgttct-tatccctttaccgcttgacatgatcctcagatgaatcgaatccttcattctttagtgaacccataataagccatagacggtatctgcag
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TATGCATTGGTCTATCAGCTTCTGAAGATTTTTCTCACTCAGAGGCTTGATGCCTATTTAGATTTTCATGCTGCAAACTCAACTCTACTTAAAAGCTATGgtaattgttttctgatcttgcaacatttaaaaccctgttctggtagatgacctagccaattttct--tttatttggaatttgcatctgggaatgt-tgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|309381111|gb|HO850332.1|HO850332EST: AGGATTTCTGCAAACATACG GACTTGTCGAGGAAGACTGTGTAGCAAAGATGAGGTTGTTGTCCCTAGTTG
genomic: AGGATTTCTGCAAACATACGgtactgttct ... gtatctgcagGACTTGTCGAGGAAGACTGTGTAGCAAAGATGAGGTTGTTGTCCCTAGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGCACCAGTTTACCAGCTACTGAAGATTTTTCTTACTCAGAGGCTAGATGCATACATGGAATTCCAAAATGCGAATTCAGGATTTCTGCAAACATACGgtactgttcttatccctttaccgcttgacatgatcctcagatgaatcgaatccttcattctttagtgaacccataataagccatagacggtatctgcag
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