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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTATTGTTCCAACTGCAAGGCAATGCTTACTGCTGTTGATGGTGCTGTTGAACTCGTGGTAGATAGGCCATATAAGGCCGGGGATCCTATAGTTGTCTGgtgcgtctgtaagccaaattgcttcctacagctagctttttcattctgatctatttttcatacttttgcatttcctcctttatttgaag

Basic information

species Arabidopsis thaliana
transcript AT5G14260.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G14260.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA19G22520.1 (Glycine max), 5'ss of exon 6
CCTATTGTTCCAACTGCAAGGCAATGCTTACTGCTGTTGATGGTGCTGTTGAACTCGTGGTAGATAGGCCATATAAGGCCGGGGATCCTATAGTTGTCTGgtgcg-tctgtaagccaaattgcttcctacagctagctttttcattc-tgatctatttttca---tacttttgcatttcctcctttatttgaag----------------------
||||      |||||||||||||||||| |||||||||||||| |||||||| || |  || ||| | || ||||| |||||||| || || ||||| ||||  | |  |||   ||  |   | | |  |  | |       |  | || | |     | |   |  || |  ||| |   ||| |||  |||                      
CCTACCAAAGCAACTGCAAGGCAATGCTAACTGCTGTTGATGGCGCTGTTGAGCTTGCAGTTGATCGCCCGTATAAAGCCGGGGACCCAATTGTTGTGTGgtatgatacgtacttcatttgattgcatgtaatttggaaaaaaagacatggtttggcaatgactttgtttctttattacgagcttcattataagatttacagttggtcattgtcag

upper sequence: AT5G14260.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G07100.1 (Glycine max), 5'ss of exon 6
CCTATTGTTCCAACTGCAAGGCAATGCTTACTGCTGTTGATGGTGCTGTTGAACTCGTGGTAGATAGGCCATATAAGGCCGGGGATCCTATAGTTGTCTGgtgcg-tctgtaagccaaattgcttcctacagctagctttttcattctgatctatttttca---tacttttgcatttcctcctttatttgaag----------------------
||||      |||||||||||||||| | |||||||||||||| |||||||| |||| ||| ||| | || ||||| || ||||| || || ||||| ||||  | |  |||   ||  |   |   |  |  |             || | |       |   |  || || ||| |   ||| |||  |||                      
CCTACCAAAGCAACTGCAAGGCAATGTTAACTGCTGTTGATGGCGCTGTTGAGCTCGCGGTTGATCGCCCGTATAAAGCTGGGGACCCAATTGTTGTGTGgtatgatacgtacttcatttgattgtatgtaatttagaaaaaagacatggtttggcaaggactttgtttctgtattacgagcttcattataagatttacagttggtcattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116473444|gb|EG516036.1|EG516036
EST:     GAACTCGTGGTAGATAGGCCATATAAGGCCGGGGATCCTATAGTTGTCTG                         GTGTGGGCCACAACCAA
genomic: GAACTCGTGGTAGATAGGCCATATAAGGCCGGGGATCCTATAGTTGTCTGgtgcgtctgt ... ttatttgaagGTGTGGGCCACAACCAA