1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCATTGCTGTGTCAAGGGACCATAAACCGGACCAAAGTGATGAACGTGAAAGGATTGAGAATGCTGGTGGATTTGTGATGTGGGCAGgtaagtagcaagaaactataggactatatttctgctgcttcatgcttttttcaacatatagtcctaattataggggtgtgttcattcataaactaaatag
species | Arabidopsis thaliana |
transcript | AT5G10740.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACGTGAAAGGATTGAGAATGCTGGTGGATTTGTGATGT-GGCAG GAACTTGGAGGGTAGGAGGAGTTCTTGCAGTTTCTCGTGCGTTTGGTGATCEST: gi|116449506|gb|EG492098.1|EG492098
genomic: AACGTGAAAGGATTGAGAATGCTGGTGGATTTGTGATGTGGGCAGgtaagtagca ... aactaaatagGAACTTGGAGGGTAGGAGGAGTTCTTGCAGTTTCTCGTGCGTTTGGTGATC
EST: TGATGAACGTGAAAGGATTGAGGATGCCGGTGGATTTGTGATGTGGGCAG GAACTTGGAGGGTAGGAGGAGTTCTTGCAGTTTCTCGTGCGTTTGGTGATCEST: gi|125103147|gb|EL157655.1|EL157655
genomic: TGATGAACGTGAAAGGATTGAGAATGCTGGTGGATTTGTGATGTGGGCAGgtaagtagca ... aactaaatagGAACTTGGAGGGTAGGAGGAGTTCTTGCAGTTTCTCGTGCGTTTGGTGATC
EST: AACGTGAAAGGATTGAGAATGCTGGTGGTATTTGTGATGTGGGCAG GAACTTGGAGGGTAGGAGGAGTTCTTGCAGTTTCTCGTGCGTTTGGTGATCEST: gi|116449507|gb|EG492099.1|EG492099
genomic: AACGTGAAAGGATTGAGAATGCTGGTGG-ATTTGTGATGTGGGCAGgtaagtagca ... aactaaatagGAACTTGGAGGGTAGGAGGAGTTCTTGCAGTTTCTCGTGCGTTTGGTGATC
EST: TGATGAACGTGAAAGGATTGAGGATGCCGGTGGATTTGTGATGTGGGCAG GAACTTGGAGGGTAGGAGGAGTTCTTGCAGTTTCTCGTGCGTTTGGTGATC
genomic: TGATGAACGTGAAAGGATTGAGAATGCTGGTGGATTTGTGATGTGGGCAGgtaagtagca ... aactaaatagGAACTTGGAGGGTAGGAGGAGTTCTTGCAGTTTCTCGTGCGTTTGGTGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATTGCTGTGTCAAGGGACCATAAACCGGACCAAAGTGATGAACGTGAAAGGATTGAGAATGCTGGTGGATTTGTGATGTGGGCAGgtaagtagcaagaaactataggactatatttctgctgcttcatgcttttttcaacatatagtcctaattataggggtgtgttcattcataaactaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA