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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGgtatgtaaaatcttcaaacttggtctagctaatttaacaatcattgtctgtggttaattagttagtcctggtgttgttgttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G10510.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10510.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G33240.1 (Glycine max), 5'ss of exon 8
TCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGgtatgtaaaat--cttcaaacttggtctagctaatttaacaatcattgt-ctgtggttaattagttagtc--ctggtgttgttgttgtag------------
                       |||||||||||| ||  | ||||||||||| |||||||| || ||||| ||||||||||||||| | ||||| || |||||  |   |  |||| |   | |    | ||  | || ||| ||||   |||  | ||||  ||| |    |  ||||  || || ||            
-----------------------GCATCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTAGCTGGAAACAAAGATCTTTACTTGGGAACATTCGgtatacattttttcttccataattgctatgtta--taaaaaatgattggattgttataaatttcttaatggattattgttaatggtgaagtttcactgcatc

upper sequence: AT5G10510.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G02760.1 (Glycine max), 5'ss of exon 8
TCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGgtatgtaaaatcttcaaacttggtctagctaat-ttaacaatcattgt-ctgtggttaattagttagtc--ctggtgttgttgttgtag------------
                       |||||||||||| ||  | ||||||||||| |||||||| || ||||| ||||||||| | ||| | ||||| || |||||  |   | |||   | | ||     |  | | || ||| |||||  |||  | || |  ||| |    |  ||||  || |  ||            
-----------------------GCATCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTAGCTGGAAACAAAGATTTATACTTGGGAACATTCGgtatacacg-ttttcttccatagttgctatgttataaaaaattattgtattgttttaaactttttaatggattattgttaatggtcaagtttcaccgcatc

upper sequence: AT5G10510.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G38190.1 (Glycine max), 5'ss of exon 6
TCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGgtatgt----aaaatcttcaaacttggtctagcta-atttaaca--atcattgtctgtggttaa---ttagttagtcctggtgttgttgttgtag-----
                       |||||| ||||| ||  | ||||||||||| |||||||||||||| || ||||| ||||| ||| | ||||| ||| ||| ||    |  |||| | |   |  ||| |||  ||  |  |  ||  |||  | |  ||||   |||  ||     |   |  ||  | ||      
-----------------------GCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTTgtaagtttttagcatctgccattgttatcttgctttatacagtatgattgttggatttaattaaggcttaaatatgttagagatccttaatatatatcca

upper sequence: AT5G10510.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv00s0772g00020.t01 (Vitis vinifera), 5'ss of exon 6
TCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGgta--tgtaaaatcttcaaacttggtctagctaatttaac-aatcattgtctgtggttaa--ttagttagtcctggtgttgttgttgtag----------
                       ||||||||||||||| || |||||||||||||| || ||||||||||| || ||||| || ||||| || || |||||||  | |  ||| || |   | | |   | |||    |  ||  | |     || | ||   | || ||     |  |   | || | |          
-----------------------GCATCATCAACAAGGTCGATGGCAAGCAAGGATAGGTCGAGTTGCTGGAAATAAAGACCTGTACCTGGGGACATTTGgtaaatatgcaattttaactttagataatgataacgagattaacgactagacttgctcaaacctggtgagcttcagaatgtctattctggagtgtggact

upper sequence: AT5G10510.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv00s1291g00010.t01 (Vitis vinifera), 5'ss of exon 7
TCGATATACCGAGGTGTTACAAGGCATCATCAACAAGGACGTTGGCAAGCAAGGATTGGCCGAGTTGCTGGGAACAAAGATCTTTACCTTGGAACCTTTGgtatgtaaa-atcttcaaacttggtc-----tagctaatttaacaatcattgtctgtggttaat-tagttagtcctggtgttgttgttgtag----------
                       ||||||||||||||| || |||||||||||||| || ||||||||||| || ||||| || ||||| || || |||||||  ||   |  || ||  || |       || | |  ||||| |  |  | |||     ||  | || ||     |  |   | || | |          
-----------------------GCATCATCAACAAGGTCGATGGCAAGCAAGGATAGGTCGAGTTGCTGGAAATAAAGACCTGTACCTGGGGACATTTGgtaaatatgcaattttaactttagataatgataacgagattaacgacta--gactggctcaaacctggtgagcttcagaatgtctattctggagtgtggact