1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAGAATGATAACGGTTGGAAGAAGAGTGGTACGTACCATGTTATGACTTCATATGTTCAACCTCTGTTACTATGGTTAGGAGCTCTATTCATCTGCAGgtatatctatcaagtagttcctcgggactttctgagatttaattgttgagatattttggtggtatcctcatctgaagtgcttggttgagataattgattgctggtgactattccttatatag
species | Arabidopsis thaliana |
transcript | AT5G10490.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTATTCATCTGCAG GGCATTAGATCCTGTTGTCCTTCCTACAGAAGCTAGCAAAATTGTGAAGGAEST: gi|164179960|gb|ES053684.1|ES053684
genomic: TCTATTCATCTGCAGgtatatctat ... ccttatatagGGCATTAGATCCTGTTGTCCTTCCTACAGAAGCTAGCAAAATTGTGAAGGA
EST: TCATATGTTCAACCTCTGTTACTATGGTTAGGAGCTCTATTCATCTGCAG GGCATTAGATCCTGTTGTCCTTCCT
genomic: TCATATGTTCAACCTCTGTTACTATGGTTAGGAGCTCTATTCATCTGCAGgtatatctat ... ccttatatagGGCATTAGATCCTGTTGTCCTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAATGATAACGGTTGGAAGAAGAGTGGTACGTACCATGTTATGACTTCATATGTTCAACCTCTGTTACTATGGTTAGGAGCTCTATTCATCTGCAGgtatatctatcaagtagttcctcgggactttctgagatttaattgttgagatattttggtggtatcctcatctgaagtgcttggttgagataattgattgctggtgactattccttatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG