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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTACATGAAGCAATTGCTTACCGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgattttccttaatacaatgttgatgtttggttatcacctttacttgcatattaacctagattttgatccag

Basic information

species Arabidopsis thaliana
transcript AT5G10270.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10270.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os05g32360.1 (Oryza sativa), 5'ss of exon 6
TGTTACATGAAGCAATTGCTTACCGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtg---------attttccttaatacaatgttgatgtt-tggttatcacctttacttgcatattaacctaga----ttttgatccag---------------
||||||||||||||| | ||||| || ||||| ||||||||  | |||||||| || || |||||||| ||||||          |   | | | | |   | || || |  | || ||||   ||   ||  | |||  ||| |    |  |||| ||                
TGTTACATGAAGCAACTCCTTACAGGCCTTCATTATTGTCACATTAATCAAGTTCTGCATCGTGATATTAAAGgtatacaacactaagcttcgttacattttattcatctcatagtgatcatgattttgtggtttttatgctaaaatattcctgattcaaaatctactcttgcag

upper sequence: AT5G10270.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv00s0805g00020.t01 (Vitis vinifera), 5'ss of exon 5
TGTTACATGAAGCAATTGCTTACCGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgattttccttaatacaatgttgatgtttggttatcacctttacttgcatattaacctagattttgatccag
||||| |||||||| || || || ||||||||||| ||||| || |||||||| |||||| | || || ||||                                                                         
TGTTATATGAAGCAGTTACTGACTGGGCTTCACTACTGTCACGTCAATCAAgtacttcacagggacatcaaag-------------------------------------------------------------------------