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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTCCAAATACGCAATGAAAAATATGTTTTGGAAAAGCGTATTGCGCACATGCGTTCGgttagcttttctttttatctattacaaaatatgtgtaactttatcttgtgacgaattatagttacttattctgttaaccacttagggggtaatttatctttcttgttgtgacag

Basic information

species Arabidopsis thaliana
transcript AT5G08440.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G08440.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G31880.1 (Glycine max), 5'ss of exon 7
GAAGTCCAAATACGCAATGAAAAATATGTTTTGGAAAAGCGTATTGCGCACATGCGTTCGgttagcttttctttttatcta-----ttacaaaatatgtgtaac-tttatcttgtgacgaattatagttacttattctgtt-aaccacttagggggtaatttatctttcttgttg-tgacag
||||  ||||||||||| ||||||||||| ||||||||||| |||||  | ||||||  |||  || |    |||| || |     ||   ||||   |  | | | | |  |||   | | | |   |  |||||   || | |  ||       ||| | || | |  | ||| ||  ||
GAAGCACAAATACGCAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTGgtatgcatgaaattttgtcaaagtctttgtgaaattccttaagcatcttttatgttttgcacttttcct-tttatttgattgagcttctgctcaaataaataatttgtaatattgctgctag

upper sequence: AT5G08440.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G35770.1 (Glycine max), 5'ss of exon 8
GAAGTCCAAATACGCAATGAAAAATATGTTTTGGAAAAGCGTATTGCGCACATGCGTTCGgttagcttttctttttatcta-----ttacaaaatatgtgtaac-tttatcttgtgacgaattatagttacttattctgtt-aaccacttagggggtaatttatctttcttgttg-tgacag
||||  |||||||| || ||||||||||| ||||||||||| |||||  | ||||||  |||  || |    |||| |  |     ||   ||||   |  | | | | |  |||   | ||| |   |   ||||  ||| | |  ||       ||| | || | |  | ||| ||  ||
GAAGGACAAATACGGAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTGgtatgcatgaaattttgttgaaatctttgtgaaattccttaagcatcttttgtgttttgcatttttcct-tatatttggttgagcttctgctcaaataaataatttgtaatattgctgctag

upper sequence: AT5G08440.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 6
GAAGTCCAAATACGCAATGAAAAATATGTTTTGGAAAAGCGTATTGCGCACATGCGTTCGgttagcttttctttttatctattacaaaatatgtgtaactttatcttgtgacgaattatagttacttattctgttaaccacttagggggtaatttatctttcttgttgtgacag
||||  |||||||||||||| ||||||||| ||||||| || |||||  | ||||||| |||  ||          || || |  | | |   | |  |   |  ||||  | |||     |  |   | |  |   ||| |   |   |   || || || | ||| ||    
GAAGCACAAATACGCAATGAGAAATATGTTCTGGAAAAACGCATTGCTTATATGCGTTTGgtaggcagga------atatact-tacacttcttattccccca--ttgttccaaatccccttctcccttccctt---ccaatctcgacttttcttctccttttggttatgtt--