Sequence
atgc intronic sequence ATGC exonic sequenceGCTATTCTGCTCAATGCTTTGCTCGGACCCCAAGCTTGATTCACACCGTTTCAAAGACATGCTTGATGAGGCCATTGCAGCAGgtaatttatctttctgtatttagtatatacgtcttacaagattatcttctcatctatggaatccttgacgttataagatgagcttgccttctatttgtac...
Basic information
species | Arabidopsis thaliana |
transcript | AT5G06910.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G06910.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G090689_T01 (Zea mays), 5'ss of exon 4
GCTATTCTGCTCAATGCTTTGCTCGGACCCCAAGCTTGATTCACACCGTTTCAAAGACATGCTTGATGAGGCCATTGCAGCAGgtaatttatctttctgtatttagtatatacgtcttacaagattatcttctcatctatggaatccttgacgttataagatgagcttgccttctatttgtac------------------------------------------------------
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GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGATGAGGCGATTGGTGAAGgtaaac-acatggttgtagttactgctgtcgtttggaaggatttcaattagtttcattcatacagttacagtagcaagtgccctagttatgcaattttagttgtcagtgaaatatctgtttctgaaagcacttgccattcctttttaatatcag
upper sequence: AT5G06910.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G006753_T01 (Zea mays), 5'ss of exon 4
GCTATTCTGCTCAATGCTTTGCTCGGACCCCAAGCTTGATTCACACCGTTTCAAAGACATGCTTGATGAGGCCATTGCAGCAGgtaatttatctttctgtatttagta-tatacgtcttacaagattatcttctcatctatggaatccttgacgttataagatgagcttgccttctatttgtac
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GCTTTTCTGCACAATGATTTGCTCAGAACCAAAGCTTGATTCTCACCGCTTCAAGGATATAATTGATGAGGCGATTGGTGAAGgtaaac-acatggttgtagttactgctagtcgtttggaaggatttcaattagtttcattcatacagttacagtagcaagtgccctggttatgcaattttag
upper sequence: AT5G06910.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv08s0007g07960.t01 (Vitis vinifera), 5'ss of exon 6
GCTATTCTGCTCAATGCTTTGCTCGGACCCCAAGCTTGATTCACACCGTTTCAAAGACATGCTTGATGAGGCCATTGCAGCAGgtaatttatct-----ttctgtatttagtatatacgtcttacaagattatct-tctcatctatggaatccttgacgttataagatgagcttgc-cttctatttgtac
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GCTTTTCTGTTCAATGCTTTGTTCTGACCCTAAGCTGGATTCACACCGATTCAAGGATATTCTTGATGAGGCAATATCAGCAGgtaagggttctactagctttctttttgtttttttcccttcctgagataagttgtctgatatttagccattctattttcttggaattagtgaaaaccccta-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164151851|gb|EL971105.1|EL971105EST: GCTTGATTCACACCGTTTCAAAGACATGCTTGATGAGGCCATTGCAGCAG GAGAAGTGAAGTCAAG
genomic: GCTTGATTCACACCGTTTCAAAGACATGCTTGATGAGGCCATTGCAGCAGgtaatttatc ... tccttttcagGAGAAGTGAAGTCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTATTCTGCTCAATGCTTTGCTCGGACCCCAAGCTTGATTCACACCGTTTCAAAGACATGCTTGATGAGGCCATTGCAGCAGgtaatttatctttctgtatttagtatatacgtcttacaagattatcttctcatctatggaatccttgacgttataagatgagcttgccttctatttgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccttct