1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAAGGAAAAgtatgtatttactttctaatccagatatagctacttgtttgttttgttatcactctatgtctttgtttaaacacttatcatcatatagagctattgattaaggaaatgactctagactagattgagtttgctttgtggattggttttattagtgttgaataggttcttacaaatactgaaaatgctttcccttattacag
species | Arabidopsis thaliana |
transcript | AT5G06360.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGTTGCTGAAGATGAAATGTTTAGAGTGATACGATCTGGAAAAAGGNAAA CTAAACAATGGAAGCGGATGGTTACEST: gi|86081020|gb|DR376777.1|DR376777
genomic: AGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAAGGAAAAgtatgtattt ... cttattacagCTAAACAATGGAAGCGGATGGTTAC
EST: AGTTGCTGAAGATGAAATGTTTAGAGTGATACGATCTGGAAAAAGGAAAA CTAAACAATGGAAGCGGATGGTTACAAAAGCTACATTTGTTGGACCTGCTTEST: gi|86050588|gb|DR346343.1|DR346343
genomic: AGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAAGGAAAAgtatgtattt ... cttattacagCTAAACAATGGAAGCGGATGGTTACAAAAGCTACATTTGTTGGACCTGCTT
EST: AGTTGCTGAAGATGAAATGTTTAGAGTGATACGATCTGGAAAAAGGAAAA CTAAACAATGGAAGCGGATGGTTACAAAAGCTACATTTGTTGGACCTGCTTEST: gi|163988744|gb|ES117307.1|ES117307
genomic: AGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAAGGAAAAgtatgtattt ... cttattacagCTAAACAATGGAAGCGGATGGTTACAAAAGCTACATTTGTTGGACCTGCTT
EST: AGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAAGGAAAA CTAAACAATGGAAGCGGATGGTTACAAAAGCTACATEST: gi|86050593|gb|DR346348.1|DR346348
genomic: AGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAAGGAAAAgtatgtattt ... cttattacagCTAAACAATGGAAGCGGATGGTTACAAAAGCTACAT
EST: AGTTGCTGAAGATGAAATGTTTAGAGTGATACGATCTGGAAAAAGGAAAA CTAAACAATGGAAGCGGATGGTTACAAAAGCTACATTTGTTGGACCTGCTTEST: gi|86072911|gb|DR368668.1|DR368668
genomic: AGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAAGGAAAAgtatgtattt ... cttattacagCTAAACAATGGAAGCGGATGGTTACAAAAGCTACATTTGTTGGACCTGCTT
EST: AGTTGCTGAAGATGAAATGTTTAGAGTGATACGATCTGGAAAAAGGAAAA CTAAACAATGGAAGCGGATGGTTACAAAAGCTACATTTGTTGGACCTGCTT
genomic: AGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAAGGAAAAgtatgtattt ... cttattacagCTAAACAATGGAAGCGGATGGTTACAAAAGCTACATTTGTTGGACCTGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCGTCCAGTTGCTGAAGATGAAATGTTTAGAGTGATCCGATCTGGAAAAAGGAAAAgtatgtatttactttctaatccagatatagctacttgtttgttttgttatcactctatgtctttgtttaaacacttatcatcatatagagctattgattaaggaaatgactctagactagattgagtttgctttgtggattggttttattagtgttgaataggttcttacaaatactgaaaatgctttcccttattacag
- - - - - - CTGAAG
- - - - - - - TGAAGA
- - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA