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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTGGAGCATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACCCTCGCGACTGAGgttcttgtctttacaatacatgaaattttcattatcttcccattaaatgtctgttgaaatcatgatgggggacttgtaggatttgtattgatgttcttgcaaggttacttatggacataatagttttctgctcgaggacataaataactttatagtattttgcaccag

Basic information

species Arabidopsis thaliana
transcript AT5G05780.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125042929|gb|EL115198.1|EL115198
EST:     ATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACCCTCGCGACTGAG                         GTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGG
genomic: ATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACCCTCGCGACTGAGgttcttgtct ... tttgcaccagGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGG
EST: gi|125203581|gb|EL218535.1|EL218535
EST:     CAACAATCAGTACCCTCGCGACTGAG                         GTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAG
genomic: CAACAATCAGTACCCTCGCGACTGAGgttcttgtct ... tttgcaccagGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAG
EST: gi|86079670|gb|DR375427.1|DR375427
EST:     AAAGATACAACAATCAGTACCCTAGCGACTGAG                         GTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAG
genomic: AAAGACACAACAATCAGTACCCTCGCGACTGAGgttcttgtct ... tttgcaccagGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAG
EST: gi|47831858|gb|CK121542.1|CK121542
EST:     ATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACCCTCGCGACTGAG                         GTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAG
genomic: ATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACCCTCGCGACTGAGgttcttgtct ... tttgcaccagGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGGGAG