1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGAGTCAACGTTTTGAGCGGCGAACATTTGCAGACCCCTTTGAAGTTTATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAGgttggtgatggagagaacatttctcaacaactttgcattttgtacttgtggataaaccatcaatgctgttttcgttctgttattcag
species | Arabidopsis thaliana |
transcript | AT5G05730.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAG GCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTAEST: gi|116398981|gb|EG441573.1|EG441573
genomic: ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAGgttggtgatg ... tgttattcagGCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTA
EST: ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAG GCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTAEST: gi|164052297|gb|ES027507.1|ES027507
genomic: ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAGgttggtgatg ... tgttattcagGCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTA
EST: ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAG GCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATEST: gi|116399901|gb|EG442493.1|EG442493
genomic: ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAGgttggtgatg ... tgttattcagGCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAAT
EST: ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAG GCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTA
genomic: ATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAGgttggtgatg ... tgttattcagGCTAGAGGATGCATTTTGGTAGCATCAAGTCCAGAAATTCTCACCAAAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGAGTCAACGTTTTGAGCGGCGAACATTTGCAGACCCCTTTGAAGTTTATAGAGCACTAAGAGTTGTGAATCCAAGTCCGTATATGGGTTATTTGCAGgttggtgatggagagaacatttctcaacaactttgcattttgtacttgtggataaaccatcaatgctgttttcgttctgttattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA