1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAGgtaatgtttactctgcttattggatgattacttttgtgtcctgtgttttatacaaactcttttctaatgtcttagtcgagttttataaagaagcttgcagtcattaaaagctagctctaggttactgatgtctcatttctgctttggatttatttggtacag
species | Arabidopsis thaliana |
transcript | AT5G04740.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAG ATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAGEST: gi|124912677|gb|EH986672.1|EH986672
genomic: AGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAGgtaatgttta ... tttggtacagATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAG
EST: AATAAAGGCTCCCGAAAAGAAG ATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAGEST: gi|164060850|gb|EL967300.1|EL967300
genomic: AATAAAGGCTCCCGAAAAGAAGgtaatgttta ... tttggtacagATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAG
EST: TGGGTGAGTACTTTTGGAAATAAAGGCTCCCGAAAAGAAG ATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAGEST: gi|164129830|gb|EL977746.1|EL977746
genomic: TGGGTGAG-ACTTTTGG-AATAAAGGCTCCCGAAAAGAAGgtaatgttta ... tttggtacagATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAG
EST: TGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAG ATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAGEST: gi|164163520|gb|EL968307.1|EL968307
genomic: TGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAGgtaatgttta ... tttggtacagATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAG
EST: TGGGTGAGAC-TTTGGAATAAAGGCTCCCGAAAAGAAG ATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAGEST: gi|116403963|gb|EG446555.1|EG446555
genomic: TGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAGgtaatgttta ... tttggtacagATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAG
EST: AGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAG ATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAGEST: gi|125010476|gb|EL082745.1|EL082745
genomic: AGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAGgtaatgttta ... tttggtacagATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAG
EST: AATAAAGGCTCCCGAAAAGAAG ATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAGEST: gi|86082088|gb|DR377847.1|DR377847
genomic: AATAAAGGCTCCCGAAAAGAAGgtaatgttta ... tttggtacagATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAG
EST: AGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAG ATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAGEST: gi|124733233|gb|EH824635.1|EH824635
genomic: AGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAGgtaatgttta ... tttggtacagATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAGATGGACCAAAG
EST: TGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAG ATTGATGTCGATATCGCAACTCATATACATGTGEST: gi|164169079|gb|ES199945.1|ES199945
genomic: TGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAGgtaatgttta ... tttggtacagATTGATGTCGATATCGCAACTCATATACATGTG
EST: GAGACTTTTGGAATAAAGGCTCCCGAAAAGAAG ATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAG
genomic: GAGACTTTTGGAATAAAGGCTCCCGAAAAGAAGgtaatgttta ... tttggtacagATTGATGTCGATATCGCAACTCATATACATGTGAAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGCAGTGAGCAACTTGCAATGGGTGAGACTTTTGGAATAAAGGCTCCCGAAAAGAAGgtaatgtttactctgcttattggatgattacttttgtgtcctgtgttttatacaaactcttttctaatgtcttagtcgagttttataaagaagcttgcagtcattaaaagctagctctaggttactgatgtctcatttctgctttggatttatttggtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG