1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGGGATACAATTCGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAGgttagcctcttctcacaatcttccaccctattagtatttatgcgtttatatgaatcaatctctatttgtgttactactatggataatatggtgttacaag...
species | Arabidopsis thaliana |
transcript | AT5G04430.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAG GAAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGAGEST: gi|164042999|gb|ES120687.1|ES120687
genomic: CGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAGgttagcctct ... tatattccagGAAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGAG
EST: CGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAG GAAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGAEST: gi|124841760|gb|EH926197.1|EH926197
genomic: CGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAGgttagcctct ... tatattccagGAAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGA
EST: CGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAG GAAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGAEST: gi|124943983|gb|EL020127.1|EL020127
genomic: CGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAGgttagcctct ... tatattccagGAAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGA
EST: AACTACGCACCCAACGGTTCTGGAGGCAAGTATTCTAAAACCACAAG GAAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGAGCATATAGGAEST: gi|86078249|gb|DR374006.1|DR374006
genomic: AACTACGCACCCAACGGTTCTGGAGGCAAGTA-TC-AAAACCACAAGgttagcctct ... tatattccagGAAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGAGCATATAGGA
EST: CGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAG GAAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGAGCATATAGGA
genomic: CGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAGgttagcctct ... tatattccagGAAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGAGCATATAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGGATACAATTCGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAGgttagcctcttctcacaatcttccaccctattagtatttatgcgtttatatgaatcaatctctatttgtgttactactatggataatatggtgttacaag
- - - - - - - - - - - - - - - - - - TGGAGG