1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGATCCCAATACCGGAGTGTCCATGTATGAATCAGATGGAATCATCAAATATCTATCCGAGAAATATGgttggtttctctgcttatgcctgattctgattgtttttagagatccttttgtggttatcgcaatagcatcattttttgtcatcatcatttctatttgagtaatactgtttccctctgtttggttaaacttattcag
species | Arabidopsis thaliana |
transcript | AT5G03880.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTCCATGTATGAATCAGATGGAATCATCAAATATCTATCCGAGAAATATG GAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACGEST: gi|124884084|gb|EH962986.1|EH962986
genomic: GTCCATGTATGAATCAGATGGAATCATCAAATATCTATCCGAGAAATATGgttggtttct ... acttattcagGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACG
EST: AATCAGATGGGATCATCAAATATCTATCCGAGAAATATG GAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACGEST: gi|116475229|gb|EG517821.1|EG517821
genomic: AATCAGATGGAATCATCAAATATCTATCCGAGAAATATGgttggtttct ... acttattcagGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACG
EST: GTCCATGTATGAATCAGATGGAATCATCAAATATCTATCCGAGAAATATG GAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACGEST: gi|86080278|gb|DR376035.1|DR376035
genomic: GTCCATGTATGAATCAGATGGAATCATCAAATATCTATCCGAGAAATATGgttggtttct ... acttattcagGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACG
EST: GTCCATGTATGAATCAGATGGAATCATCAAATATCTATCCGAGAAATATG GAGATGGAAAAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACGEST: gi|125165647|gb|EL191837.1|EL191837
genomic: GTCCATGTATGAATCAGATGGAATCATCAAATATCTATCCGAGAAATATGgttggtttct ... acttattcagGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACG
EST: AATATCTATCCGAGAAATATG GAGANGGAACAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACGEST: gi|116483992|gb|EG526584.1|EG526584
genomic: AATATCTATCCGAGAAATATGgttggtttct ... acttattcagGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACG
EST: GTCCATGTATGAATCAGATGGAATCATCAAATATCTATCCGAGAAATATG GAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACG
genomic: GTCCATGTATGAATCAGATGGAATCATCAAATATCTATCCGAGAAATATGgttggtttct ... acttattcagGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGATCCCAATACCGGAGTGTCCATGTATGAATCAGATGGAATCATCAAATATCTATCCGAGAAATATGgttggtttctctgcttatgcctgattctgattgtttttagagatccttttgtggttatcgcaatagcatcattttttgtcatcatcatttctatttgagtaatactgtttccctctgtttggttaaacttattcag
- - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - GATGGA