Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGCGGATCGAGCTGAAAGTTTATTGCTTTCTTTAAAACAACGATTCCCAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAGgttactacatggaaatcaaatcccaaatcattctttcttcttgtaatccgctctaaacagttttcctttttctctgttttag

Basic information

species Arabidopsis thaliana
transcript AT5G02010.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G02010.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA18G41330.1 (Glycine max), 5'ss of exon 6
AATGGCGGATCGAGCTGAAAGTTTATTGCTTTCTTTAAAACAACGATTCCCAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAGgttacta--catggaaatcaaatcccaaatcattctttcttcttgtaatccgctctaaaca-gttttcctttttctctgttttag------------------
  | || ||  |||| |||||  | |||||||| ||||| || || || || ||||| |||||||| ||  | || |||||||||||||||||||||||||||   |  |||    || |  |   ||  |  | ||  | |||| ||   |    || ||  ||   || |    ||     |                   
GTTTGCTGAGAGAGCAGAAAGCCTTTTGCTTTCCTTAAAGCAGCGTTTTCCTGGTCTCCCTCAAACAGCCTTGGATATGAGCAAAATCCAATACAACAAGgtttgcattcattattattaggttaaaacaccattttagtccttgaaa---gtgtaaagcacattagtctctagaactaaggaaattcataacaagtctttaa

upper sequence: AT5G02010.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G16790.1 (Glycine max), 5'ss of exon 6
AATGGCGGATCGAGCTGAAAGTTTATTGCTTTCTTTAAAACAACGATTCCCAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAGgtta--ctacatggaaatcaaatcccaa-atcattctttcttcttgtaatccgctctaaacagttttcctttttctctgttttag---------------
  | || ||  |||| |||||  | |||||||| || || || || || || ||||| |||||||| ||  | || |||||||||||||||||||||||||||    | |||     | |      || | |||| |    |     |       | |   ||  ||    |        || |                
GTTTGCAGAGAGAGCAGAAAGCCTTTTGCTTTCCTTGAAGCAGCGTTTTCCTGGTCTCCCTCAAACAGCCTTGGATATGAGCAAAATCCAATACAACAAGgtttgctttcattattgttagggtaaaacaccattttggtcttgaaaatgtaaagccattaagccttgaaatcaagaaaattcaaaataagttcctacaa

upper sequence: AT5G02010.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G26010.1 (Glycine max), 5'ss of exon 5
AATGGCGGATCGAGCTGAAAGTTTATTGCTTTCTTTAAAACAACGATTCCCAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAGgttactacatggaaatcaa---------atcccaaatcattctttcttcttgtaatccgctctaaacagttttcctttttctctgttttag-----------
| | || ||  |||| |||||  |  |||| || || || || || ||||| | |||||||||||| ||  | || |||||||||||||||| ||||||||||| ||  |    ||  |         |    ||| | || ||    |||  | |  | | |    || |||   ||   ||  | ||||           
ACTTGCAGAAAGAGCAGAAAGCCTTCTGCTCTCCTTGAAGCAGCGTTTCCCTGCTCTTCCTCAAACAGCCTTGGATATGAGCAAAATCCAATGCAACAAGgttagtatctaattatttataatgttccactttaaagcctttttatggcttaca-tatgtttttggtaggtttgtgttagttcc-tattagtccctacattt

upper sequence: AT5G02010.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA03G16610.2 (Glycine max), 5'ss of exon 5
AATGGCGGATCGAGCTGAAAGTTTATTGCTTTCTTTAAAACAACGATTCCCAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAGgttactacatggaa-----------atcaaatcccaaatcattctttcttcttgtaatccgctctaaacagtttt-cctttttctctgttttag-------
| | |  ||  |||| |||||  |  | || || || || || || || || | |||||||||||| ||  | || |||||||||||||||| ||||||||||| || ||  ||            | | |    ||| | || |   | ||| || |  | | |    ||||||   ||  || || || |         
ACTTGTAGAAAGAGCAGAAAGCCTTCTACTCTCCTTGAAGCAGCGTTTTCCTGCTCTTCCTCAAACAGCCTTGGATATGAGCAAAATCCAATGCAACAAGgttagtatatctaattgtttataatgttacactttaaagccttttcattacttata-tatgtttttggtagttttgtgttagtccctattcttttagttcc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125312523|gb|EL326608.1|EL326608
EST:     CAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAG                         GACATCGGGAAATCGATTCTGGAAAGCTATTCAAGAGTTCTA
genomic: CAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAGgttactacat ... tctgttttagGACATCGGGAAATCGATTCTGGAAAGCTATTCAAGAGTTCTA