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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGCTTAGCAATATAAGATATCACACTAGTGTCATTATATCTCTCTTTCAGGCGTTGGGAACACTTTCTATAAGTTCCAGGCGGCTCAACCGACTCAGgtaatgctttatgttggatctcatgtcagacgcttaaatggtgaatactgtttagctgtttctaattattggaatgttgttgcttccggcag

Basic information

species Arabidopsis thaliana
transcript AT4G39850.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G39850.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G14480.1 (Glycine max), 5'ss of exon 3
AGATGCTTAGCAATATAAGATATCACACTAGTGTCATTATATCTCTCTTTCAGGCGTTGGGAACACTTTCTATAAGTTCCAGGCGGCTCAACCGACTCAGgtaatgctttat--gttggatctcatgtcagacgcttaaat-ggtgaatactgtttagctgtttctaattattggaatgt-tgttgcttccg-gcag----------------------------
||||||| |||||| |||||||||| |||||||||||||| || || |||||  |  | ||||| |||||||| ||| | || |||||||||||||||||||| |  || |   ||    | ||   | ||| | | | ||  | | | |    ||   || |  |  ||  | |  | | | ||| ||     ||                             
AGATGCTAAGCAATCTAAGATATCATACTAGTGTCATTATTTCCCTATTTCAATCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAACCGACTCAGgta-tatttgaccagtcatttgtcccttaagaagttgatattagaggacatgccttgtatgctattcctttctagggtttgttttgtttgtatacaaatactctagttatttgtatgttttacag

upper sequence: AT4G39850.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G31270.1 (Glycine max), 5'ss of exon 4
AGATGCTTAGCAATATAAGATATCACACTAGTGTCATTATATCTCTCTTTCAGGCGTTGGGAACACTTTCTATAAGTTCCAGGCGGCTCAACCGACTCAGgtaatgctttat--gttggatctcatgtcagacgcttaaatggtgaatactgtttagctgtttctaattattggaatgttgttgcttccggcag-------------------------------
||||||| |||||| |||||||||| |||||||||||||| ||  | |||||  || | ||||| |||||||| ||| | || |||||||||||||||||||| |  || |   ||    | ||   | ||| | | | ||         || || | || |  |  ||  | |  | || ||  ||  |                                   
AGATGCTAAGCAATCTAAGATATCATACTAGTGTCATTATTTCCTTATTTCAATCGCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAACCGACTCAGgta-tatttgactggtcatttgtccctttagaagttgatattagaggacatgctttgatgctattcctttctagggtttttttttttttgtatactaatattctagttatctgtatgttttacag