1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATCAGGAACAATGTTTTGATCGGTGGAGATGATTTCAAGAGTGGTCAAACCAAGATGAAATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAGgtttgtttaacttgcgtatcaagttactctttcttgttactgaaaatatttgtcacaagactttggtttcattgattgtgtgtttttgtttatag
species | Arabidopsis thaliana |
transcript | AT4G39800.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCAAGATGAAATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAG CCTACTTCAATTGTGAGCTAACAATCACTTGGGAAACAACGATGGAATGAEST: gi|47829945|gb|CK119629.1|CK119629
genomic: CCAAGATGAAATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAGgtttgtttaa ... ttgtttatagCCTACTTCAATTGTGAGCTA-CAATCACTTGGGAAACAACGATGGAATGA
EST: CCAAGATGAAATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAG CCTACTTCAATTGTGAGCTACAATCACTTGGGCAACAACGATGGAATGAAT
genomic: CCAAGATGAAATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAGgtttgtttaa ... ttgtttatagCCTACTTCAATTGTGAGCTACAATCACTTGGGAAACAACGATGGAATGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCAGGAACAATGTTTTGATCGGTGGAGATGATTTCAAGAGTGGTCAAACCAAGATGAAATCTGTCTTGGTTGATTTCCTAGTTGGCGCAGGAATCAAGgtttgtttaacttgcgtatcaagttactctttcttgttactgaaaatatttgtcacaagactttggtttcattgattgtgtgtttttgtttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG