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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGAAGCGTTAAAGAAACTCTCTTTGATGTACCACCAAGTTGTTGTTTCAACCGGGGGAGGGGCAGTTATAAGACCCATCAATTGgtgcgtttccttctcatcaatgatcaatgatataatctcgatcatttggtaataatgtgtccaattttgtattcag

Basic information

species Arabidopsis thaliana
transcript AT4G39540.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125309796|gb|EL323881.1|EL323881
EST:     CAACCGGGGGAGGGGCAGTTATAAGACCCATCAATTG                         GAAGTACATGCATAAAGGTATTAGTATTTGGCTTGATGTACCTCTAGAAGC
genomic: CAACCGGGGGAGGGGCAGTTATAAGACCCATCAATTGgtgcgtttcc ... ttgtattcagGAAGTACATGCATAAAGGTATTAGTATTTGGCTTGATGTACCTCTAGAAGC
EST: gi|164214916|gb|ES041749.1|ES041749
EST:     AAGTTGTTGTTTCAACCGGGGGGAGGGGCAGTTATAAGACCCATCAATTG                         GAAGTACATGCATAAAGGTATTAGTATTTGGCTTGATGTACCTCTAGAAGC
genomic: AAGTTGTTGTTTCAACC-GGGGGAGGGGCAGTTATAAGACCCATCAATTGgtgcgtttcc ... ttgtattcagGAAGTACATGCATAAAGGTATTAGTATTTGGCTTGATGTACCTCTAGAAGC
EST: gi|86084950|gb|DR380709.1|DR380709
EST:     CAAGTTGTTGTTTCAACCGGGGGAGGGGCAGTTATAAGACCCWTCAATTG                         GAAGTACATGCATAAAGGTATTAGTATTTGGCTTGATGTACCTCTAGAAGC
genomic: CAAGTTGTTGTTTCAACCGGGGGAGGGGCAGTTATAAGACCCATCAATTGgtgcgtttcc ... ttgtattcagGAAGTACATGCATAAAGGTATTAGTATTTGGCTTGATGTACCTCTAGAAGC
EST: gi|125275307|gb|EL289392.1|EL289392
EST:     TTGTTGTTTCAACCGGGGGAGGGGCAGTTATAAGACCCATCAATTG                         GAAGTACATGCATAAAGGTATTAGTATTTGGCTTGATGCACCTCTAGAAGC
genomic: TTGTTGTTTCAACCGGGGGAGGGGCAGTTATAAGACCCATCAATTGgtgcgtttcc ... ttgtattcagGAAGTACATGCATAAAGGTATTAGTATTTGGCTTGATGTACCTCTAGAAGC