1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAGgtttgtttttgctaccaagttttaaagtatcagtgtctataatatactcacattttccaatgttttttccatag
species | Arabidopsis thaliana |
transcript | AT4G38510.4 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAACATCTGGAATCGACAACAAGTACACAACTGNGNAATTTACAGGAGAG GTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGEST: gi|125194242|gb|EL209196.1|EL209196
genomic: GAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAGgtttgttttt ... ttttccatagGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGG
EST: CAACTGTGCAATTTACAGGAGAG GTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTEST: gi|125252985|gb|EL267070.1|EL267070
genomic: CAACTGTGCAATTTACAGGAGAGgtttgttttt ... ttttccatagGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGT
EST: TCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAG GTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTEST: gi|86066806|gb|DR362563.1|DR362563
genomic: TCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAGgtttgttttt ... ttttccatagGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGT
EST: GAACATCTGGAATCGACAACAAGTACACAACTGNGCAATTTACAGGAGAG GTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTEST: gi|125076187|gb|EL139433.1|EL139433
genomic: GAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAGgtttgttttt ... ttttccatagGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGT
EST: GAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAG GTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCEST: gi|164219463|gb|ES051039.1|ES051039
genomic: GAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAGgtttgttttt ... ttttccatagGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGC
EST: TCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAG GTTTTG-AAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTEST: gi|86066801|gb|DR362558.1|DR362558
genomic: TCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAGgtttgttttt ... ttttccatagGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGT
EST: GAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAG GTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTEST: gi|125284482|gb|EL298567.1|EL298567
genomic: GAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAGgtttgttttt ... ttttccatagGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGT
EST: GAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAG GTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTC
genomic: GAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAGgtttgttttt ... ttttccatagGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAGgtttgtttttgctaccaagttttaaagtatcagtgtctataatatactcacattttccaatgttttttccatag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA