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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCTCCAAGCCAAAGGGAAGGCTATGTTTGGTCTCGACGGTCCTGACTCAACTCTCATGTTAAACACTCTTATCTTCAACTGCTTCGTCTTCTGTCAGgtaaagaacaaagattactgataacaatactcgagctataaagatagattcttgacatgactttggttctgaaaactccag

Basic information

species Arabidopsis thaliana
transcript AT4G37640.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G37640.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G317270_T01 (Zea mays), 5'ss of exon 4
GATTCTCCAAGCCAAAGGGAAGGCTATGTTTGGTCTCGACGGTC---CTGACTCAACTCTCATGTTAAACACTCTTATCTTCAACTGCTTCGTCTTCTGTCAGgtaaagaacaa---------agattactgataacaatactcg--agctataaagatag---attcttgacatgactttggt--tctgaaaactccag----------
    || ||  |   ||||||  |  | || ||  ||||  | |   | |||||    ||| |  | |||||  | ||||||||||||||||||||||| ||||||  | ||           ||  |      |    |  | |    ||  |  |  ||     |||  ||   |||   ||    ||| |||   |           
---CCTGCAGTCTCGAGGGAAATCGCTCTTCGGGATCGAGCGCCGCGCCGACTCGGACCTCGTCCTCAACACCATCATCTTCAACTGCTTCGTCTTCTGCCAGgtacggtacggtcaagcgggaggctctctccattcgtctttgctgtctgcatgggaagctcgctctctactccactgaagtaccttgacaaccataatataatgcag